FMO06859.5prime Sequence
1133 bp (1018 high quality bases) assembled on 2008-10-01
> FMO06859.5prime
CAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCACTGAAAATC
TGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGGACCTTCGA
GGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGCTTCAGAAC
CGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGGATGGCGAA
TACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTAAGGCAGGG
CGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGCCATATCAG
CTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGTTGCACGAT
GAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTCACGGTCGT
TCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGGAGGAGGAG
GCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCCTGGGCAGC
AGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAGAAGGGCCT
CTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCAGTCCTCCC
AGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACGACGGACCG
GCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGAGTTGTGAT
ACCCGGCGGCAGCACGCGACTCTCCAAGCAGGGAAGCTCCTTCGACAGCA
CCGTAGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGGAATGCGCCC
ACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACCACCGAGTGC
GACTTCCACTGCTGTGCGCTGCACGAGGAGGGCGCAAGATCGCTGTGCAC
AAAAGCGTGACCACGTCGCCCATCAGGAACGGAAGCAGCAGTCCCAGCCG
CAGTCGGCACCATCGGTATGGATCCTATGCTGGGCGCAGCGGTGGCGCGG
AGCCGCAGCATGCAACGCCGCTCCTCGGGCGCCAAGGGCCATGTGGATCT
GAATCCTTCCGAACGGATAGCCTCAGAAGCGAACCGGAAAACCCGGGAAT
GGAGACACAAACCACACGTAAAGTTCCGCTGCT
FMO06859.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-2-RC | 5839 | CG1975-RC | 1002..2045 | 9..1045 | 4940 | 98.8 | Plus |
| Drep-2-RA | 5229 | CG1975-RA | 1003..2046 | 9..1045 | 4940 | 98.8 | Plus |
| Drep-2-RD | 1827 | CG1975-RD | 74..1106 | 20..1045 | 4885 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9298266..9299027 | 291..1045 | 3360 | 97.9 | Plus |
| 2R | 25286936 | 2R | 9297264..9297536 | 19..291 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:42 has no hits.
FMO06859.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:06 Download gff for
FMO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-2-RA | 994..2050 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:44 Download gff for
FMO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep2-RA | 993..2049 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:03 Download gff for
FMO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-2-RA | 994..2050 | 1..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:03 Download gff for
FMO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9297269..9297536 | 24..291 | 100 | -> | Plus |
| 2R | 9298267..9299027 | 292..1045 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:06 Download gff for
FMO06859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5184774..5185041 | 24..291 | 100 | -> | Plus |
| arm_2R | 5185772..5186532 | 292..1045 | 98 | == | Plus |
