FMO06860.5prime Sequence
1044 bp (709 high quality bases) assembled on 2008-10-01
> FMO06860.5prime
CAGTCGACATGTCATTTCGCGTATTGCGCAGTTCCAAGTTCCGCCACGTC
TACGGACAGGCTCTCAAGCGGGAGCAGTGCTACGACAACATACGGGTATC
CAAGTCCAGCTGGGACTCCACATTCTGCGCGGTGAATCCCAAGTTCCTGG
CCATTATCGTAGAGTCGGCGGGCGGCGGAGCCTTCATCGTCCTGCCACAC
AACAAAGTTGGTCGCATTGCGGCTGACCACCCTTTGGTGGGCGGTCACAA
GGGTCCTGTGCTGGACATCGCCTGGTGCCCCCACAACGACAACGTGATCG
CCTCCGGCTCAAAGGACTGTGTGGTCAAAGTGTGGCAGATCCCCGATGGC
GGGCTGTCGCGAACACTCACCGAACCCGTGGTCGACCTGGTTTTCCACCA
GCGTCGCGTGGGTCTGGTGTTGTGGCATCCCTCTGCGCTCAACGTGCTGC
TTACCGCCGGCTCCGATAACCAGGTCGTGATTTGGAACGTGGGCACTGGT
GAAATCCTCGAGCACATCGACTCCCATCCGGACATCGTTTACAGCGCCTG
CTTCAACTGGGATGGCTCTAAGTTGGTTACCACCTGCAAGGATAAAAAGA
TCCGCATCTACGATCCGCGCACTGCCCAACTGGAGAGCGAAGCCCTGTGT
CATGAGGGCTCCAAGGCCACGAGGGCCATTTTCCTACGTCACGGTCTGAT
CTTCACCACATGCTTCATCGTAGCTCGAAGCGTCAGTACTCCCTGCGCGA
CCGGATGCCCTTAACGAAACCCTTGTCTGGGTGGAGCTGGAACACGTCCA
ACGGCGTAATGATCCCTTCTTTAACTACTCAACCCAACCTGATCCACTTG
TGTGGAAAAGGGACTCCGGCCTTCGTATTTCGAGGAACGCCCAACCTCCT
TTTGTCACTACATAACACGTTTTTGATACAGAGCGCAGGTGGTATTTGTC
CTGATGCCAATCGAGGCTGTGATGTGACCACTTGCAAGGTCGCCAAGTTC
CATCGCAGACAACCATCGTTTTGTGTCAGCATTCCTCGAATGAC
FMO06860.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| coro-RG | 2769 | CG9446-RG | 101..1109 | 9..1007 | 4165 | 95.3 | Plus |
| coro-RF | 2794 | CG9446-RF | 126..1134 | 9..1007 | 4165 | 95.3 | Plus |
| coro-RE | 2696 | CG9446-RE | 287..1295 | 9..1007 | 4165 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6864705..6865051 | 817..472 | 1410 | 95.7 | Minus |
| 2R | 25286936 | 2R | 6865106..6865374 | 475..207 | 1330 | 99.6 | Minus |
| 2R | 25286936 | 2R | 6866685..6866884 | 208..9 | 970 | 99 | Minus |
| 2R | 25286936 | 2R | 6864442..6864492 | 1007..957 | 195 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:13 has no hits.
FMO06860.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:18 Download gff for
FMO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coro-RE | 280..1307 | 1..1018 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:37 Download gff for
FMO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coro-RC | 266..1293 | 1..1018 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:06 Download gff for
FMO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coro-RE | 280..1307 | 1..1018 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:06 Download gff for
FMO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6864636..6865049 | 474..884 | 93 | <- | Minus |
| 2R | 6865108..6865374 | 207..473 | 99 | <- | Minus |
| 2R | 6866687..6866891 | 1..206 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:18 Download gff for
FMO06860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2754192..2754396 | 1..206 | 97 | | Minus |
| arm_2R | 2752141..2752554 | 474..884 | 93 | <- | Minus |
| arm_2R | 2752613..2752879 | 207..473 | 99 | <- | Minus |
