FMO06863.5prime Sequence
614 bp (614 high quality bases) assembled on 2008-10-01
> FMO06863.5prime
CAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGACTCCTACTG
ATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCGATGGACGA
TGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGAAGACCAGA
GTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCAGCGAAAAG
ATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGATGTGGTTCT
CAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGTGGTCTTGT
GGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGGTGCAGCCC
AACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAGGCGAGTCC
CCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGGATCCGTGG
TCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCATTGCCCCG
GAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTGGGATGCAC
TGTCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGCACATGCAA
GCTTTCTAGACCAT
FMO06863.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| babos-RB | 1303 | CG3624-RB | 361..948 | 9..596 | 2940 | 100 | Plus |
| babos-RA | 1116 | CG3624-RA | 361..948 | 9..596 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22394231..22394553 | 596..274 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 22394612..22394816 | 273..69 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 22401639..22401699 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:51 has no hits.
FMO06863.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:35 Download gff for
FMO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babos-RA | 354..954 | 1..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:29 Download gff for
FMO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3624-RA | 351..951 | 1..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:31 Download gff for
FMO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babos-RA | 354..954 | 1..604 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:31 Download gff for
FMO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22394225..22394553 | 274..604 | 98 | <- | Minus |
| 2R | 22394612..22394815 | 70..273 | 100 | <- | Minus |
| 2R | 22401639..22401706 | 1..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:35 Download gff for
FMO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18281730..18282058 | 274..604 | 98 | <- | Minus |
| arm_2R | 18282117..18282320 | 70..273 | 100 | <- | Minus |
| arm_2R | 18289144..18289211 | 1..69 | 94 | | Minus |
