FMO06866.5prime Sequence
918 bp (817 high quality bases) assembled on 2008-10-01
> FMO06866.5prime
CAGTCGACATGGAGAACTTAACGCAGAATGTAAACGAAACCAAGGTGGAT
TTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAGCATGCCAC
CGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTCCAGTTCCT
CCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCAGCACCTGC
TGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCCATCCCGGC
CACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTACGTCCACC
GCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTGAGATTGCC
ATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTCGGGCTACC
CGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGACCGGCGTC
TGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCAACTGGTTC
CACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATTCCCCTGGA
GGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGCGGGCGTTT
TTGCCGGATCCCTGGGCACCAGTGTCGTCGACTTGGAGGTCTTCCTGGTG
GGCGCCAGCGGGTGGCGTCTATGCCCTGTTGGCCGCACATCTGGCCAACA
TTTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACTCGGATC
CGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACACCCAAT
ACTTCGATGGAAGCGCCTTCGCAAGGGTCCCCAAGTGTCGTACATTTGCC
AACTGACGGAAGCCCTGGAAGACTAACGATCGGCTTTCTGGTGCTAAAAA
ACTTCGGTCACCAAAGTA
FMO06866.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-RB | 3000 | CG1004-RB | 341..1245 | 8..912 | 4315 | 98.7 | Plus |
| rho-RA | 2531 | CG1004-RA | 341..1245 | 8..912 | 4315 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1466488..1466907 | 343..764 | 1995 | 99.3 | Plus |
| 3L | 28110227 | 3L | 1465486..1465822 | 8..344 | 1685 | 100 | Plus |
| 3L | 28110227 | 3L | 1467039..1467189 | 764..912 | 550 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:43 has no hits.
FMO06866.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:46 Download gff for
FMO06866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 335..1251 | 1..917 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:21 Download gff for
FMO06866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 354..1270 | 1..917 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:56 Download gff for
FMO06866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 335..1251 | 1..917 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:56 Download gff for
FMO06866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1465480..1465822 | 1..344 | 98 | -> | Plus |
| 3L | 1466490..1466907 | 345..764 | 99 | -> | Plus |
| 3L | 1467040..1467195 | 765..917 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:46 Download gff for
FMO06866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1465480..1465822 | 1..344 | 98 | -> | Plus |
| arm_3L | 1466490..1466907 | 345..764 | 99 | -> | Plus |
| arm_3L | 1467040..1467195 | 765..917 | 92 | | Plus |
