FMO06868.5prime Sequence
1153 bp (1006 high quality bases) assembled on 2008-10-01
> FMO06868.5prime
CAGTCGACATGGCGGGAGAAATGCCCATTAAGCCCTGGGACGGACTGCGA
TACGCTTTCGAATCATGTGACGCAATGCTTCGTGACTCAGAAACAAAGGA
GCTGACCAAGAAAAGCTTTGATTTGGCTATATTAGATGGAGCTTTCCCAG
AGTGCTTCTTGGGATTAATGTACGACTTCAAGATTCCATTTATGTACATA
AACACGGTGGGATTCTACACAGGCAGTATCTCGACTGCAGGAAATCCCGT
TAGCTACGCTATTACTCCCAACTTCTATTCTCGATTTACGGACACAATGA
ATCTTTACGAACGTGCTATTAATACGGCCATGCAGATTGGACAAACACTG
ATGCACATGTATGTTATGCGTCGGACTCACCTTGTGATGCGAGAGCACTT
GGGTACTCAAATCCCGCATCCTTACGAAATGTCGCGCAACGTGAGTTTCA
TTTTGCAAAATGGACACGCAGTTTTGTCTTATCCTAGAGCCTTTAATCCG
AATGTAGCAGAAGTGGCTTGCATTCATTGTAGGCCAGCTAGAAAACTTCC
TAGAAACCTTGAGGAATTCATCGGTGCTTCTGGAGCATCTGGATTTATTT
ACGTTTCTATGGGTTCCTCCGTAAAGGCCGCGAACATGCCAGAGGCGTTG
CGTCACATGCTTGTAAAGACCTTTGCACGTCTTCCCTATCATGTGCTATG
GAAGTATGAAGGCAGTTCGACAGATATAAAAGACATCACATCAAACGTAA
AACTTTCACGGTGGTTACCGCAGCAGGACATTTTGGGACATCCCAAGCTT
AGAGCGTTTGTAACACATGGAGGCTTGCTAAGCATGTTTTGAGACGGTAT
ATCACGGAGTACCCGTTGTTACAATGCCGGGTATTCTGCGACCACGATGT
TAACTCAACCCAGGGCCGAGGTCGATGGATATGCATAAAGTTAGATCTTC
GGACGCTGTCAGCCAATCAGTTGTACGAGGCTATTATGAAGGTGATTCCC
AATCCTCGCTACGAAATTCAGCACGACATCGGCAAAGGCTGTTCCTGGAC
AGCGCTCAACAGCGCTAGAACTGCCATATACCTGGACCGAAATGGGGCTG
CGACTATGGGCGCTTATTCATTCACAGACTCAATCGGAAATTGAACTGGG
GGT
FMO06868.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 2226 | CG30438-RE | 371..1498 | 8..1135 | 5175 | 97.8 | Plus |
| CG30438-RD | 2310 | CG30438-RD | 455..1582 | 8..1135 | 5175 | 97.8 | Plus |
| CG30438-RC | 2732 | CG30438-RC | 877..2004 | 8..1135 | 5175 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5547987..5548732 | 359..1104 | 3185 | 97.5 | Plus |
| 2R | 25286936 | 2R | 5547628..5547924 | 63..359 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 5267807..5268042 | 316..63 | 755 | 87.4 | Minus |
| 2R | 25286936 | 2R | 5267417..5267669 | 1004..741 | 525 | 83.4 | Minus |
| 2R | 25286936 | 2R | 5539375..5539429 | 8..62 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 5267673..5267723 | 711..661 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:34 has no hits.
FMO06868.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:07 Download gff for
FMO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 873..1975 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:13 Download gff for
FMO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 822..1924 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:21 Download gff for
FMO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 873..1975 | 1..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:21 Download gff for
FMO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5539371..5539429 | 1..62 | 95 | -> | Plus |
| 2R | 5547628..5547924 | 63..359 | 100 | -> | Plus |
| 2R | 5547988..5548734 | 360..1107 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:07 Download gff for
FMO06868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1435133..1435429 | 63..359 | 100 | -> | Plus |
| arm_2R | 1426876..1426934 | 1..62 | 95 | -> | Plus |
| arm_2R | 1435493..1436239 | 360..1107 | 97 | | Plus |
