FMO06869.5prime Sequence
1159 bp (982 high quality bases) assembled on 2008-10-01
> FMO06869.5prime
ATTAAACGAAGTTATCAGTCGACATGGCCGCGAAGCCCGAGGATAAGAGC
ACGGATATTCCGGATCGCCTCGTCGACATCAACCAGCGGAAAACCTACAA
GCGCATGCGGTTCTTCGGCAAGGGCGGGTTTGCAAAATGTTACGAGATCA
TCGATGTGGAAACCGACGACGTCTTCGCCGGCAAGATCGTATCCAAGAAG
CTGATGATCAAACACAATCAGAAGGAGAAGACCGCCCAGGAGATAACTAT
TCACCGCAGCCTTAACCATCCGAACATTGTCAAGTTTCACAACTACTTTG
AAGATTCGCAGAATATCTACATTGTGCTGGAGCTGTGCAAGAAAAGATCC
ATGATGGAGCTGCACAAACGTAGGAAAAGCATTACGGAGTTCGAATGCCG
CTACTACATTTACCAGATAATCCAGGGCGTTAAGTACTTGCACGATAACC
GCATTATCCATCGAGATCTGAAGCTGGGCAATCTCTTCCTCAACGATTTG
TTGCACGTGAAGATCGGGGATTTCGGGTTGGCCACGCGCATTGAGTATGA
GGGCGAGCGAAAAAAGACCTTATGCGGAACGCCCAACTATATAGCCCCGG
AGATCCTCACCAAGAAGGGCCACTCCTTCGAGGTGGACATCTGGTCGATT
GGCTGCGTCATGTACACACTGCTTGTGGGCCAGCCGCCGTTTCGAAACCA
AGACTCTGAAAGATACGTACTCGAAAATCAAGAAGTGCGAGTACCGCGTG
CCCAGCTACTTTAAGAAACCGGCGGCGGATATGGGTCATCGCCATGCTGC
AGCCAAATCCGGAGAGCCGCCCGGCAATTGGTCAGCTGCTGAACTTTGAG
TTCCTCAAGGGCTACAAGGTGCCCATGTTCTTGCCCAGCTCTTTGTCTGA
CAATGGCGCCGCGTATCGGCAGCAACGACACCATCGAGGATCCATGCCCC
GCAGCCACTGATGGAAATGAACGGCATCAGCCCGACGATCTTCTCCGGAG
TCAACCTCCCTCAGGCCATCTGCACGACGCCCTTACCGCGTCAGCGCAGT
GGTGCGCCCCCGCCAGACTATCCGACATATCGGAGGCCTGTACCACCACC
TCACTATCCTTATCACGGAAGCCGCTAATTCTCGTCAAGCATTCTTGGCG
CACTACAAC
FMO06869.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polo-RB | 2324 | CG12306-RB | 264..1381 | 24..1132 | 4780 | 96.1 | Plus |
| polo-RA | 2980 | CG12306-RA | 657..1774 | 24..1132 | 4780 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20311335..20312039 | 348..1049 | 2870 | 96.3 | Plus |
| 3L | 28110227 | 3L | 20311047..20311273 | 121..347 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 20310310..20310409 | 24..123 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:00 has no hits.
FMO06869.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:17 Download gff for
FMO06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 651..1695 | 17..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:10 Download gff for
FMO06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RB | 300..1344 | 17..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:25 Download gff for
FMO06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 651..1695 | 17..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:25 Download gff for
FMO06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20311049..20311273 | 123..347 | 100 | -> | Plus |
| 3L | 20310304..20310408 | 17..122 | 97 | -> | Plus |
| 3L | 20311335..20312049 | 348..1061 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:17 Download gff for
FMO06869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20303404..20303508 | 17..122 | 97 | -> | Plus |
| arm_3L | 20304149..20304373 | 123..347 | 100 | -> | Plus |
| arm_3L | 20304435..20305149 | 348..1061 | 96 | | Plus |
