FMO06871.5prime Sequence
1122 bp (989 high quality bases) assembled on 2008-10-01
> FMO06871.5prime
CAGTCGACATGAAGTTCAGTGTGGTGGTCCTGGTGGCCCTACTACCGCTG
CTAGGAGCTGTTTCAGCGAATCGCACTTTTGTGGTGGACTACGAAAAGGA
TCAGTTCCTAAAGGATGGAGAACCATTCCGATTCATTGCCGGCTCCTTCC
ACTACTTCCGTGCTCATCCAGCCACCTGGCAAAGGCATCTTAGGACCATG
AGAGCTGCGGGTCTGAATGCGGTGACAACCTATGTGGAGTGGTCATTGCA
CAATCCGCGGGATGGCGTTTATGTGTGGAGCGGCATTGCCGATCTGGAAC
ACTTTATACGCCTGGCCGTGGGCGAGGATCTGCTGGTCATCCTCCGTCCG
GGTCCGTATATTTGTGCGGAGCGTGACATGGGCGGCTTTCCCTACTGGCT
GCTGAATAAGTATCCGGGCATTCAGCTCCGGACAGCAGATGTCAATTATC
TTAGCGAAATTCGCATTTGGTATACCCAACTGTTTGCCAAAATGAATAAA
TATCTGTATGGCAATGGTGGGCCAATTATAATGGTTCAGGTGGAGAACGA
ATATGGCTCCTTCTATGCCTGCGATCTCAACTATCGGAATTGGCTACGCG
ATGAGACCGAGAGTCATGTCAAAGGTCAGGCGGTGCTCTTCACCAACGAT
GGACCCAGTGTGCTGCGCTGTGGAAAAATCCAGGGCGTCCTAGCGACCAT
GGACTTTGGAGCAACGAACGATCTCAAGCCCATTTGGGCCAAAGTTTAGA
AGTACCAGCCAAAGGGTCCGCTGGTCAATGCGGAAAACTATCCCGGGTGG
CTAACTCACTGGACGGAGCCGATGGCCCAATGTTAGCACCCAATCGATTA
CTCCACTTTTTATAAACATGCTGGATCATGGTGCCAGTGTGAACTTTCTA
CATGTTCTACGGCGGCACAACTTCGGATTCCACAGCTGGTGTCAATGACA
TTGGAACCGGAAACTACATGGCTGACATAACAGCTACGACTACGTTGCAC
CCATGACGGAAGGCGGGGGATCCCACTCCCAAATACCAGGCCCCGCCACG
CATCATGGCCCTTATTCTCCCTTGCAATCCACCCGTGGCCCGGACCGAAC
CAAGCGATCCTACGGAAGGTGC
FMO06871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ect3-RA | 2236 | CG3132-RA | 164..1274 | 9..1117 | 4960 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12001776..12002182 | 445..852 | 1870 | 97.8 | Plus |
| 3R | 32079331 | 3R | 12001210..12001430 | 9..229 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 12001482..12001701 | 225..444 | 1085 | 99.5 | Plus |
| 3R | 32079331 | 3R | 12002298..12002489 | 864..1056 | 635 | 94.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:22 has no hits.
FMO06871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:04 Download gff for
FMO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ect3-RA | 156..1280 | 1..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:03 Download gff for
FMO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ect3-RA | 127..1251 | 1..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:12 Download gff for
FMO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ect3-RA | 156..1280 | 1..1122 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:12 Download gff for
FMO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12001203..12001430 | 1..229 | 98 | -> | Plus |
| 3R | 12001487..12001701 | 230..444 | 100 | -> | Plus |
| 3R | 12001776..12002193 | 445..863 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:04 Download gff for
FMO06871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7826925..7827152 | 1..229 | 98 | -> | Plus |
| arm_3R | 7827209..7827423 | 230..444 | 100 | -> | Plus |
| arm_3R | 7827498..7827915 | 445..863 | 98 | -> | Plus |
