FMO06872.5prime Sequence
439 bp (439 high quality bases) assembled on 2008-10-01
> FMO06872.5prime
CAGTCGACATGTCCACCTTTAACTTCGCCAGCATGGCCGCCCAACTGGGC
CAGGAGCAGGGAATATCATTCGAGAACAAGGTGCTTTCCTGGAACACAGC
TGCCGATGTCCAGGATGTGGTGGATGCCCTTAACAAACAGACCACCGTGC
ACTATCTGAATCTGGACGGGAACACACTGGGCGTTGAGGCCGCCAAGGCG
ATTGGTGAGGGTCTGAAGCGTCATCCAGAGTTTCGGAAGGCGCTGTGGAA
GAACATGTTTACTGGTCGTCTCATATCGGAGATTCCGGAGGCACTCAAGC
ACCTGGGAGCCGCGCTAATTGTCGCGGGCGCCAAACTGACAGTCCTGGAT
CTCAGCGACAATGCCTTAGGACCGAATGGCATGCGAGGCTTAAAGGAGTT
ACTGCGATCCCCGGTCTGCTACTCGCTGCAGGAGCTGCT
FMO06872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RanGAP-RB | 2008 | CG9999-RB | 138..569 | 8..439 | 2145 | 99.8 | Plus |
| RanGAP-RA | 2401 | CG9999-RA | 531..962 | 8..439 | 2145 | 99.8 | Plus |
| RanGAP-RC | 2144 | CG9999-RC | 298..705 | 32..439 | 2025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19445344..19445675 | 108..439 | 1645 | 99.7 | Plus |
| 2L | 23513712 | 2L | 19445185..19445285 | 8..108 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:54 has no hits.
FMO06872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:14 Download gff for
FMO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 524..962 | 1..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:24:00 Download gff for
FMO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGap-RA | 442..880 | 1..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:22 Download gff for
FMO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 524..962 | 1..439 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:22 Download gff for
FMO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19445178..19445285 | 1..108 | 96 | -> | Plus |
| 2L | 19445345..19445675 | 109..439 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:14 Download gff for
FMO06872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19445178..19445285 | 1..108 | 96 | -> | Plus |
| arm_2L | 19445345..19445675 | 109..439 | 99 | | Plus |
