FMO06873.5prime Sequence
1127 bp (943 high quality bases) assembled on 2008-10-01
> FMO06873.5prime
CGTTATCAGTCGACATGGAGAGCCGCAGCGACATCCATCGCCAGTTGGCA
GCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGATCGTCGTCGAAGG
ACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTGGACAAGGCGGCGC
GAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGGCCTCC
CATACGGCGGCGCGCGAGAACGAGAAGCTGCAGGACGCAATGCTGGACGT
GCGCATCCAGAAGTCACCATCGATTGCCCTGCTCCACCAGGGACCCAACA
AGCAGGCCGCAGAAAAGGAGCTCAAGTCAGCGGAGAAGGATTGCGTCAAG
CTGGATAACAAGCGCAAGAAGGCCGAGGAGGCGGTGAAGCGTGCGGATGT
GGAATACTACACCCTGTGCGTGCGTTCGGAGCGAGCACGCGTAGACTGGG
AGATGGCCGTGCTCCGGGGAAGTGCCCAACTGCAGAGCAGCGAACAGCAG
CGGCTGGGCAATATGCACAACTTTGCCCAGCAGTATGCACGCCTCATCTC
GGACATGAATCCGATACTCGGTGGCCCTGAGCACACGCCTGCAGCCGCAA
CTCGATGCTTGCAATGTGGCTAAGGATATGCAAGTGGTGCGCCACATCCG
CCGCAATTCGGAGGGACCCAGTGAGCAACTCCTACCGGACTTTTACTGCG
AACACACCACGCTGGCCATGAATCGGGAGCGTCGCAAGCACGCTCTGATC
AAGCTGCTGCAGCTGGTCAGACGGATCTGGAGCGGGAGCGACGATCCCGC
GACGGATTGAAGGGACTGTCGCAATCGCTTAACCATCAGGAGCATCAGAC
ATCACCGATAAGCTGTACCACATTCGTTTCATGCTGACTATTTGGGAGGC
GCCCGTCTCAGCTGCACTTCTGCCCTCTTGGAGCTGGACACAGCTCAGAG
CCACTTCACCCACTGGCCCAGCACATTCTATTCACCCGTGACGGCACTGG
TTTGCAGCCGAGCATCTGAGGTGCCCAACTGCTTGAGAAACACGACAAGT
CGCGACGCATCATCGACTATATGCTGCCCACGACTCTCACGAACATACCC
TTACCAAAGGATGACTCGAAGGAAAAC
FMO06873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-RG | 5133 | CG42388-RG | 2039..3118 | 15..1084 | 4775 | 97.1 | Plus |
| CG42388-RD | 2735 | CG42388-RD | 897..1976 | 15..1084 | 4775 | 97.1 | Plus |
| CG42388-RC | 3014 | CG42388-RC | 1176..2255 | 15..1084 | 4775 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9051467..9052217 | 122..871 | 3595 | 99.5 | Plus |
| X | 23542271 | X | 9051303..9051412 | 15..124 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:23 has no hits.
FMO06873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:01 Download gff for
FMO06873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 1173..2246 | 12..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:57 Download gff for
FMO06873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4040-RA | 144..1217 | 12..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:31 Download gff for
FMO06873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 1173..2246 | 12..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:31 Download gff for
FMO06873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9051300..9051410 | 12..122 | 99 | -> | Plus |
| X | 9051468..9052217 | 123..871 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:01 Download gff for
FMO06873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8945333..8945443 | 12..122 | 99 | -> | Plus |
| arm_X | 8945501..8946250 | 123..871 | 99 | -> | Plus |
