FMO06874.5prime Sequence
1146 bp (1007 high quality bases) assembled on 2008-10-01
> FMO06874.5prime
CAGTCGACATGTCATCCGCCGCGAAGAAACGGGAGGCGCAGAAGAAGAAG
GATGCGCGCAACAAGAAGATCCAACAGATACCCTCCACCAAGAAGGCCAA
TGGTGTCCCGGAACGCGAACTGACCGAGGAGGAGAAGCTGTGCGCCAAGC
TGGAGGAGGAGGCCCGGATCAGTGCGGAGGCCCGATCCTGCACCGGATCG
CTGGCGGTGCATCCGCGTTCCCGTGACGTCAAGATCGCCAACTTTTCGAT
CACGTTCTTTGGCTCCGAGCTGCTGCAGGACACCATGCTGGAGTTGAATT
GCGGGCGTCGCTACGGTCTGATTGGCCTGAACGGATGCGGTAAGTCCTCG
CTGCTGGCCGTGCTTGGCGGCAGGGAGGTGCCGGTACCGCCGCACATCGA
CATCTTCCACTTGACGCGCGAAATCCCGGCCAGTTCAAAGAGTGCGCTGC
AGTGCGTCATGGAGGTGGATGAGGAGCGCATTAAGCTAGAGAAGCTGGCC
GAAGAGCTGGCCATGAGCGAGGAAGATGATGCTCAGGAGCAGCTGATCGA
CATCTACGAGCGGCTGGACGATATGTCCGCCGATCTGGCAGAGGTCAAGG
CGGCCCGCATCCTTCACGGTCTTGGCTTCGACAAGGCCATGCAACAGAAA
CAGGCCAAGGACTTCTCAGGTGGTTGGCGTATGCGTATCGCCTTGGCCCG
CGCGCTGTTTGTGAAGCCCCATCTGCTGTTGCTGGAAGAGCCGACGAATC
ACTTGGATTTGGACGCCTGTGTGTGGCTGGAGGAGGAGCTTAAGACATAC
AAGCGAATCCTGGTGCTCATCTCGCACTCGCACGATTTCCTCAACGGTGT
CTGCACAACATCATTCACCTGACGGGCAAGCGACTCAAGTACTATACGGG
TAACTATGAGGCCTTTGTGCGCACACGCATGGAACTGCTGGAAACCAGAT
GAGCAGTACAACTGGGACAGACCAGATTTCCGCACATGAGACTACATTGC
TCGATTCGTCACGGTTCCGCAAGTTGGCCCCGACAGGCGCAGTCCAGAAA
AACGCCTGGCCAAATGTGCTCAGGACCTCACAGAGAGGTGTCCGACGATA
GTGCTCACTTTACCTCCCACTGTCGCAAGGTTCCGCCACCGTGATA
FMO06874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 243..1399 | 9..1145 | 5030 | 96.9 | Plus |
| CG9281-RC | 3033 | CG9281-RC | 71..1227 | 9..1145 | 5030 | 96.9 | Plus |
| CG9281-RB | 3205 | CG9281-RB | 243..1399 | 9..1145 | 5030 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15708311..15708974 | 672..9 | 3320 | 100 | Minus |
| X | 23542271 | X | 15707855..15708241 | 1046..667 | 1395 | 94.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:20 has no hits.
FMO06874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:59 Download gff for
FMO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1370 | 9..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:55 Download gff for
FMO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RC | 71..1198 | 9..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:28 Download gff for
FMO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1370 | 9..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:28 Download gff for
FMO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15707772..15708238 | 670..1119 | 93 | <- | Minus |
| X | 15708314..15708974 | 9..669 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:59 Download gff for
FMO06874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15601805..15602271 | 670..1119 | 93 | <- | Minus |
| arm_X | 15602347..15603007 | 9..669 | 100 | | Minus |
