FMO06876.5prime Sequence
1113 bp (933 high quality bases) assembled on 2008-10-01
> FMO06876.5prime
CAGTCGACATGACCACAACGAACTCAAGCAATTCCAGCACCACCTCGGTG
ACCACGCAGCAGCAGAAGGAGCAGATCGGAGGCAGTTCCTCCACCACATC
GAAGGTGTACATCAAGAAGACCGGGAGCAGTAGCAATAGCACTACCAGCA
GCACCACCACAGCTTCCTCTTCGGCGGGTCGCAAGGAGAGCTTTGGTTCC
CGTGACTCCCTGAACGATATCCTTAGTGAAACGGGTCTGCCCACCGGCAA
TGTGGCTGCCCAAAGGAAATCCCTGGAGAACAAGAACCTGGACCTGACTA
AGCCACCTGGAGTGGGAGCATCAGTGTCCATTGGACAGCAGCGGAGCAGC
ACCTCTAGTGCCACCACCTCCTCAGCCACTACAGTAGCCACTGGACTAAC
CTCATCATCAGTGAGCAAGTCCATGGAGAACATGCTGGACGAGAAGGTCA
AGTCGCCACCACCGCCGGTGCTCAGCAAGAAGCCCAGTGTGCCGCTCAAG
AAAACTCCCACCGGCGGAGTTCCTATGACTGGTAACCTTTTGGGCGGCAA
GAAAAAGAATACCGAGGGAAAGCTCACCACTGCCGTGTCCCATGATTTGG
CGGATGGTCTTGCGGCCAGCAAGATGCTTTCAGGTGCTAATCAACTACCT
GAATCTGGAGCAGCTGGCAATGTGGTGATCCCGGAGAGCTGCCACGATTG
CAGTGGAGGATACAGATTTCGATCGCGTGGAGAGGGCTTCCATACTCACG
GATATGCGGCAAGGAAGGCTCAAGGCGCCAAAGAGACGTCCACCATCGGC
GGCTATCAATGTGCTGGGCGAAAGTAATACCAATTCCGTATTTGTAAATG
GCAGTGGATGTCCCGGATCTTGGTGAAGCAGGAAGTGCCAGTGAGTTTGA
GTGAAATGGCGGTGCTGAAGGAGACTTCTGATTGACATTCCACCGGCGAG
GACCAAGTTGGGCAAACCAAGCCACGTGATGGGAGAGAGAAGCCGCCTTG
GATGGAGGACTGAAGGCTTCGCAGTCACAGGAAAAAGACTTCACTCTATG
TGGGAGCCACGAGGAGGTTCGGGTGGCGATAGGGAATTCCAACCTCTTTG
CGCGGCGAGCAGC
FMO06876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 4440 | CG31012-RJ | 1865..2975 | 7..1111 | 4740 | 96.2 | Plus |
| cindr-RI | 2225 | CG31012-RI | 105..1215 | 7..1111 | 4740 | 96.2 | Plus |
| cindr-RH | 2281 | CG31012-RH | 161..1271 | 7..1111 | 4740 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30824362..30824888 | 7..533 | 2635 | 100 | Plus |
| 3R | 32079331 | 3R | 30824954..30825503 | 531..1072 | 1715 | 92.8 | Plus |
Blast to na_te.dros performed 2014-11-28 20:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1092..1142 | 115..163 | 114 | 74.5 | Plus |
FMO06876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:46 Download gff for
FMO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..1245 | 1..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:50 Download gff for
FMO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-RB | 182..1271 | 1..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:32 Download gff for
FMO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..1245 | 1..1083 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:32 Download gff for
FMO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30824357..30824886 | 1..531 | 99 | -> | Plus |
| 3R | 30824955..30825514 | 532..1083 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:46 Download gff for
FMO06876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26650079..26650608 | 1..531 | 99 | -> | Plus |
| arm_3R | 26650677..26651236 | 532..1083 | 93 | | Plus |
