FMO06878.5prime Sequence
714 bp (712 high quality bases) assembled on 2008-10-01
> FMO06878.5prime
CAGTCGACATGAAAATTTACAAGCAGAAACTGCGCGATGTGTGGCTGCAA
ATGGAGGAGTTTCGTGCGTGGCTGCGGCGTGATCCGGACGACTCCTACCG
GGCGCACTGCCGCTTCTGCAAATGCTGCGTAAACACCAAAATAAGCGATC
TGCGTGCACATGCGTCGACCAAGAAGCATATGAAGCACTTAAACCTTAAA
CAGCAAATCAAAACCACAGACGACAGCCCCTTAAACAGGTCATCCGCCAG
CAGCTCCAGCACCACTCCCTACAAGGTCAAGGTGAAGTCGCAGCCAAAAA
CTTCCCCGGTAAAAAAGGAAAAAATCAGTGCATCGGATCAGTCCGTCGAC
TACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAGCAGGTCAT
GTTCTCATCGTGCTCCCTGACCGGCGGCGGCGAGCAAAGGCTAGAGGACG
ACGTTGAAGGCGAGGGCGAGATGTCCACCATCAGCATTATGGACGAGGAA
ATGGTCAACAAAGGCAGTGGCCAATGCTCTGCGCACCCAGAAGGACAGCT
CCCAGATCTTCGGAGACTTTGTGGCCGACCGGCTACGACAGTTGAACACC
GACGCCTCCGAGTTTGCCAAGGACAAGATAATGAAGGTGATATTGGAGGC
AGCGTCCATCGATCGGGCTCCCACTTATAATGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGG
FMO06878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10139-RA | 825 | CG10139-RA | 87..758 | 9..681 | 3340 | 99.9 | Plus |
| CG10139-RB | 954 | CG10139-RB | 41..694 | 27..681 | 3250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14645614..14646084 | 210..681 | 2310 | 99.8 | Plus |
| 2R | 25286936 | 2R | 14645356..14645556 | 9..209 | 1005 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 845..947 | 271..373 | 119 | 57.3 | Plus |
FMO06878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:18 Download gff for
FMO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10139-RA | 79..761 | 3..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:47 Download gff for
FMO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10139-RA | 78..760 | 3..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:50 Download gff for
FMO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10139-RA | 79..761 | 3..685 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:50 Download gff for
FMO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14645348..14645556 | 3..209 | 98 | -> | Plus |
| 2R | 14645614..14646087 | 210..685 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:18 Download gff for
FMO06878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10532853..10533061 | 3..209 | 98 | -> | Plus |
| arm_2R | 10533119..10533592 | 210..685 | 99 | | Plus |
