FMO06879.5prime Sequence
1165 bp (991 high quality bases) assembled on 2008-10-01
> FMO06879.5prime
CAGTCGACATGTCTGAGCCAGAGGTGACCAGCGTTGTAGATATGAAATCG
CCCAACATATCCTCCTCCTGCTCCTTCTTCAAGCTGAAGAAGCTGTCGGA
GGAGTCGCTTCTGCAGCCGCCGGAAAAGGTCTTCGACATTATGTACAAGC
TGGGCGAGGGCAGCTATGGATCAGTCTACAAGGCAGTGCACAAGGAAAGC
AGCTCCATTGTGGCCATCAAGCTGGTGCCGGTGGAGTCCGACCTGCACGA
GATTATTAAGGAGATATCCATTATGCAACAATGCGACTCGCCGTATGTGG
TGCGCTATTACGGCTCCTACTTCAAGCAGTATGACCTGTGGATCTGCATG
GAGTACTGTGGCGCCGGCAGCGTCTCCGACATTATGCGTCTGCGCAAAAA
GACGCTGACGGAGGACGAGATAGCCACTATTCTGTCGGACACTCTGCAGG
GCTTGGTCTATCTGCATCTGCGTCGCAAGATCCATCGCGACATCAAGGCG
GCCAACATCCTGCTCAATACCGAAGGCTATGCTAAGTTGGCCGATTTCGG
AGTCGCTGGTCAGCTCACGGACACAATGGCCAAGAGAAACACTGTGATCG
GAACGCCCTTCTGGATGGCCCCCGAGGTGATTGAGGAGATTGGCTACGAC
TGTGTGGCAGACATATGGTCATTGGGCATCACCGCCTTGGAAATGGCCGA
GGGAAAGCCCCCATACGGTGAGATCCATCCCATGCGAGCCATCTTTATGA
TTCCGCAGAAGCCACCACCATCGTTCCGGGAACCGGATCGCTGGAGCACA
GAGTTCATTGACTCGTGAGCAAGTGCCTGGTAAAGGAGCCAGACGACCGG
GCACGGCCACTGAACTGCTGGAGCACGAGTTCATACGCAACGCCCAGCAC
CGATCGATCCTAAAGCCTATGCTTGAGGAGACCTGTGCCATTCACGAGCA
GCACGCGCAATCGCAGTTGGGGGGCGTGTGGCTGCTAGTCAGCGAGAGCT
TGGCCACCCAGGAAAACGGAATGCAACACCATCACCGACTACGCGTTATA
GGGAGGATCCAGGTATCTCTGGTGGCCGGAGAAGTCGGTGAATACCCACG
AAGCTCACCCTCCAATGCCACCCATAATAGCCATTGTCAAGCAGGGTGGG
ATGAGGCACTTGGCC
FMO06879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-RB | 2804 | CG11228-RB | 109..1270 | 9..1161 | 5090 | 96.9 | Plus |
| hpo-RA | 2503 | CG11228-RA | 109..1270 | 9..1161 | 5090 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19495627..19496748 | 1122..9 | 4755 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:50 has no hits.
FMO06879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:21 Download gff for
FMO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 105..1220 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:45 Download gff for
FMO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 116..1231 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:12 Download gff for
FMO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 105..1220 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:12 Download gff for
FMO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19495637..19496752 | 1..1112 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:21 Download gff for
FMO06879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15383142..15384257 | 1..1112 | 97 | | Minus |
