FMO06880.5prime Sequence
1170 bp (1058 high quality bases) assembled on 2008-10-01
> FMO06880.5prime
CAGTCGACATGGAAAGTTTCTGGCAGGAAGTGAAGTCTCTGCTGAAGACC
GTCTTCTGCTTTGTGGTGGCTATGATGCTAGTGCCTTTGCTGATGTTATC
ATTCCTGTGTGCTCACTTTGGCAACGAACTATCCAACTATGTGCTGAGCA
TCAAGTACCCGAACCTGACCATCTCAAAGTCGAAGAAGATCCGCACCTTA
ATCGACACGCCGAAGAATGCGGGCGTATTTCACTTCCTGCTGCAAGTGGA
GGGCGACTGTGACTTCGAGCGGATACGGATGGCCTATGCCCAGCATCTGA
CTGACCTGAGGGACAAGACCGGGATGCTCAGGTTCCCCAAGCTGCGTCAA
AAACTTGTCACCTGTTGGGGGCATTATGCGTGGGTGAATGACAGCAGCGG
CTTCAACATCAACAACCACGTCTTACTCAGCACCCACAAGTATCGAGGTC
GTCCGGTTAGCGAATCAAATATTCAGGAGTATGTCAGCGAGCTGGCCACG
AAGTACATCCCATCCGATCTCCCCCAGTGGCAGGTGATCGTGATCCCCAA
CTCGGATAGCACACAGCCCTACTACATACTCATTAAGCTGCACCACCTGA
TAATTGCCGAGGAGGAGGATCTGCATGTGAGTGAGATGCTCCTGCTTCAG
GATCCCCATAAGAAAACCACAATGACCCTAAGCGATGGATTGGATTGGGA
CAGTTCGAGTCCAAAACTTTCCCGCTTTGTGCGAAAGCCGGAACACATAA
GCAGACTCATCAATCATATAATCCATCTTATCATTTGCCGTTGGCAAAAG
TTCATCTACGAATTTGAATCTCTTGAAACCCCCGATGGTTCAACGTCCAG
TGATCAGGTTGGAAACCTAAGCCAGTTGATGTCGTTGGTCGTATTTGTCC
TGGTGAATGTAATTTTGGGCTATATAAGAGTCGAACTATGCTTAAGAAAC
TGAAAAAGCGTTCAGTCAGCTACCGCAATGAAGTGGGTCGTTTCAAACAA
TGCGATTGCTGCTGAATAGGGAGTTAGATCAAAGAAATCTTAATGGTCGG
TTGCCAAAATGGAATCTATAAAAGCATGCGACCACCTAATTTGGCAAGGC
CTGAACACGTTCCTTGCGTCTAATTAAAAATCATGTTTTGCTCTACCTAT
CAATTACGTGATTTGCTTCG
FMO06880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-RA | 2301 | CG33120-RA | 154..1297 | 9..1144 | 5335 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18842404..18843162 | 1144..394 | 3240 | 97 | Minus |
| 2L | 23513712 | 2L | 18843219..18843507 | 397..109 | 1445 | 100 | Minus |
| 2L | 23513712 | 2L | 18844256..18844351 | 110..15 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:31 has no hits.
FMO06880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:56 Download gff for
FMO06880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..1319 | 9..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:43 Download gff for
FMO06880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 132..1297 | 9..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:34 Download gff for
FMO06880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..1319 | 9..1161 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:34 Download gff for
FMO06880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18842382..18843158 | 398..1161 | 96 | <- | Minus |
| 2L | 18843219..18843507 | 109..397 | 100 | <- | Minus |
| 2L | 18844258..18844351 | 15..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:56 Download gff for
FMO06880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18842382..18843158 | 398..1161 | 96 | <- | Minus |
| arm_2L | 18843219..18843507 | 109..397 | 100 | <- | Minus |
| arm_2L | 18844258..18844351 | 15..108 | 100 | | Minus |
