FMO06885.5prime Sequence
494 bp (490 high quality bases) assembled on 2008-10-01
> FMO06885.5prime
CGCACTATGTGACAACTCCAATTTTCTATGTAAATGCACCTCCTCACATT
GGACACCTGTACTCAGCGGTCATAGCCGATGCCCACTGTCGCTACCAGAG
GCTAAGGTATCCAGAGCAGGATGTACGACTCTGCACGGGAACGGATGAGC
ACGGCACAAAGATCCAGCAGGCGGCATCTCTTCACGGGGTGCCCGTTGCC
AAATACTGTGATGATATATCGCAGCGATATCGAGAGGTCTTCCGCAGTGC
CAGCATCCAGCAGGATGACTTTATTCGCACCACGGAGGATCGCCACAAGC
GGGCAGTGGCCAATTTCTGGCGCACACTTCACACACGCGGCCACATATAT
TCGGCCGCCTACAGTGGTTGGTATTGCGTGTCTGACGAAACCTTCCTCAC
CGACTCCCAACTGAGATTGGACGAGGCCACTGGTACCCGATACTCCCTGG
AATCTGGACATCCCGTCGAGTGGACCGAGGAAACGATATATATG
FMO06885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-met-RC | 4314 | CG31322-RC | 140..633 | 1..494 | 2410 | 99.2 | Plus |
| Aats-met-RB | 2337 | CG31322-RB | 140..633 | 1..494 | 2410 | 99.2 | Plus |
| Aats-met-RA | 1862 | CG31322-RA | 140..633 | 1..494 | 2410 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14259467..14259747 | 320..40 | 1405 | 100 | Minus |
| 3R | 32079331 | 3R | 14259212..14259386 | 494..320 | 830 | 98.3 | Minus |
| 3R | 32079331 | 3R | 14259815..14259852 | 38..1 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:55 has no hits.
FMO06885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:22 Download gff for
FMO06885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 140..633 | 1..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:34 Download gff for
FMO06885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 135..628 | 1..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:44 Download gff for
FMO06885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 140..633 | 1..494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:44 Download gff for
FMO06885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14259212..14259385 | 321..494 | 98 | <- | Minus |
| 3R | 14259467..14259747 | 40..320 | 100 | <- | Minus |
| 3R | 14259814..14259852 | 1..39 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:22 Download gff for
FMO06885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10085189..10085469 | 40..320 | 100 | <- | Minus |
| arm_3R | 10085536..10085574 | 1..39 | 97 | | Minus |
| arm_3R | 10084934..10085107 | 321..494 | 98 | <- | Minus |
