FMO06886.5prime Sequence
1052 bp (875 high quality bases) assembled on 2008-10-01
> FMO06886.5prime
CAGTCGACATGGGCGTCATGCAGGCCACCACCATGGGCGGAGCCAAGCTG
GACAAGCGCTACTCGCCTAGTTTCCGGGATGACGCGGCCGCCGTTCCCGT
TCGCAAGATGAGCGCCTCCAAGAGGAAGCGGGATGAGGTGCTGAGAATGA
AGGTGCACAAGAATGGACAGGCCGCTGAAGTGATCAAAAGCATCTCACAA
CTGGACAACACCAATAAGCAATACTTCCTTATGCTCGAGAACATCACATC
GCAGTTCCGCAATCCCTGCATCCTGGACCTCAAGATGGGCACTCGTCAGC
ATGGAGATGATGCGTCGGCGGAGAAGCGCTCCAAGCAGATGGCCAAGTGC
GCGGCCAGCACATCCGGATCGCTCGGCGTTCGCTTGTGCGGAATGCAGAC
CTACCTGGCCGATCTGGAACAGTATGCCAAGCGTGACAAGTACTGGGGCC
GCGAGCTTAACGAGGGCGGATTCAAGACTGCGTTGCACGATTTCTTTCAC
AATGGCTACCGCCTGCGCATCCGTGTCATCCGCAAGATTCTGCAGCGCCT
GCTCCAATTACGAAGGGTGATTGAAAAGCAGTCGAGCTACAGATTCTACT
CTTGCTCACTGCTCATTGTGTACGAGGGCTTTGAGGAGAATCCAATGGCC
CCCCCTCCCTCGATGAGTCAGGATGAGTGGCCAGAGGCGCCCAGGTCGGC
CACTGTGCCCGGCACTGTCTTCGATTATCATCCGGATAACAGCATAGACG
AGGACGATCTGGAGGATGACGACGAGGCAGCAACGAGGCTGGGCGATGAG
CTGGAGGCGCACGACACCGACGATGATCTGCATCTGGTGGCGCCCACATT
GGCAACGCTTCGGGACGAACAGCAGCACAGGAGGAGATGCCTGCAACTAC
GATGCAAATGCCTCCCACGATTCTAACTCATTGCTGAACCTGGCTACCAA
ACGTCACCTGCACAGGCGTGGATTTGCAGAGGCAGCGGCGCGAGGAGTTA
AGCAAACGGGCATCCCACCAATACCCCTACCGATGAGGGAGGAAGGAGGA
GT
FMO06886.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10082-RB | 2795 | CG10082-RB | 422..1461 | 9..1050 | 4890 | 98.4 | Plus |
| CG10082-RA | 4001 | CG10082-RA | 1124..2160 | 12..1050 | 4875 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21655121..21655502 | 223..604 | 1910 | 100 | Plus |
| 2R | 25286936 | 2R | 21655591..21656025 | 604..1038 | 1755 | 96.6 | Plus |
| 2R | 25286936 | 2R | 21654774..21654907 | 12..145 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 21654968..21655046 | 144..222 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:48 has no hits.
FMO06886.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:34 Download gff for
FMO06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10082-RB | 414..1462 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:32 Download gff for
FMO06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10082-RB | 414..1462 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:30 Download gff for
FMO06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10082-RB | 414..1462 | 1..1052 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:30 Download gff for
FMO06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21654770..21654907 | 4..145 | 97 | -> | Plus |
| 2R | 21654970..21655046 | 146..222 | 100 | -> | Plus |
| 2R | 21655121..21655502 | 223..604 | 100 | -> | Plus |
| 2R | 21655592..21656036 | 605..1052 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:34 Download gff for
FMO06886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17542275..17542412 | 4..145 | 97 | -> | Plus |
| arm_2R | 17542475..17542551 | 146..222 | 100 | -> | Plus |
| arm_2R | 17542626..17543007 | 223..604 | 100 | -> | Plus |
| arm_2R | 17543097..17543541 | 605..1052 | 96 | | Plus |
