FMO06887.5prime Sequence
1107 bp (955 high quality bases) assembled on 2008-10-01
> FMO06887.5prime
CAGTCGACATGATGGAGCATTTCGGTGTCCTGGCCGTCGTGCTGCTGATC
GCGACTGCTGTCGGTGCCCAGGATACTTCGTCCAACTATCTGCTCACCGG
TCACTCAACTCCGCTGGCCAGCAGCTTTGCCCACCAGTTCTTTACCTTGG
CCTCGCAAAGCGCTGAGCTCGCCAATAGGACGAACACCCAGGTGATTCAA
ACCTACGAGGATCGCAACTACGACGATGAGCTCTGCGATCGGGATATCAA
CCTAATCAGGGATTCAATCAACAACTTGGAGGAGTGGGCACTGGAATTTC
CCGACACATGGGGTCGTTTGCCCATGGGTCTCTTCTGGGGACACACCATC
AGCATGGGTCAGTACGAGGAGTGCGTAGCAGCTAGCTCTACCCACACCAC
AGAGATTCGTGGACAGTATTGCTTGGCTAGTTTGAACATAACTACGTTTT
ATCAATCGGTTAAGAAACGCGGCGAAGAGTTCTCACGTATTAGCTATAAG
CAAACAGATCCGGAAGTCTTTGAGCTTGGCATTTGTGTTCCAAAGACATG
CAGTGCTGCAAAGACCGAAAAATTGCTCAAGTACGCTATCACCCACTTTT
ATGGACAGGATGTGATGGAATCAAACTACACAATGGTGACGGAAGCGCGC
TGCAAATACGATGCACCCATCGAGCTGCGCGGCATTGACATATTCGCAAT
CATTTTCTTCTCGCTGATCATCTTCTTCATGGTTGCCAGCAGTGTCTACG
ATTATATTCAGACCCGCAAAGGAGCCCCCAAAAAGCCACTGCTGATCGCG
TTTTCTGTACTGACAAATGCCCCCAAATTTTCACCGTTAGAAGGTGAACA
ATCCCAATGTGATTCACTGCCTAAATGGATTGCGTTGCTTTAGTATGATG
TGGGTGGTATTTGGCCACGGCTTTTATGACCTTCTACGATCTTGCCACCA
TTCAACATAACAAATTCTAACACTGGGTGCAAACCCTTATTCGATGTTGT
CCGACGGCTCGCTTGCCTGAACCGTTCTCTTCATGTCCGGTCTGCTGATG
TGCTGGGTGCTTCCGTGAATGAATCCACTGCCAGCTAACATCCCGATGGA
TGTATTT
FMO06887.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2589 | CG3106-RB | 253..1323 | 9..1069 | 4835 | 97.8 | Plus |
| CG3106-RA | 2443 | CG3106-RA | 108..1178 | 9..1069 | 4835 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9661022..9661424 | 700..298 | 2015 | 100 | Minus |
| X | 23542271 | X | 9662363..9662651 | 297..9 | 1445 | 100 | Minus |
| X | 23542271 | X | 9660525..9660817 | 1057..773 | 725 | 89.5 | Minus |
| X | 23542271 | X | 9660881..9660954 | 774..701 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:44 has no hits.
FMO06887.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:33 Download gff for
FMO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..1222 | 9..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:29 Download gff for
FMO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 106..1220 | 9..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:19 Download gff for
FMO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..1222 | 9..1107 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:19 Download gff for
FMO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9660881..9660954 | 701..774 | 100 | <- | Minus |
| X | 9661022..9661424 | 298..700 | 100 | <- | Minus |
| X | 9662363..9662651 | 9..297 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:33 Download gff for
FMO06887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9554914..9554987 | 701..774 | 100 | <- | Minus |
| arm_X | 9555055..9555457 | 298..700 | 100 | <- | Minus |
| arm_X | 9556396..9556684 | 9..297 | 100 | | Minus |
