FMO06888.5prime Sequence
871 bp (868 high quality bases) assembled on 2008-10-01
> FMO06888.5prime
CACGACCCCGCCCCATCGCCCTGCTCGCTCACATCTGGCGCCACTGCAAG
CCACTCTGCCTGCTCCTGGTGCTCCTGCTCCTCTGCGAAACCGTTCAGGC
GAATCCCGATGCCAAGCGACTCTATGACGATCTGCTAAGCAACTACAATC
GCCTCATCCGCCCTGTGAGCAATAATACGGACACGGTGTTGGTCAAATTG
GGCCTACGGCTCTCCCAACTCATCGATTTGAATCTCAAAGATCAAATTCT
AACCACCAACGTGTGGCTGGAGCACGAATGGCAGGATCATAAATTCAAGT
GGGATCCCTCGGAGTATGGCGGCGTCACAGAGCTTTATGTGCCATCCGAG
CACATCTGGCTGCCCGACATCGTGCTCTACAACAATGCCGATGGCGAGTA
CGTGGTCACCACCATGACGAAGGCCATCCTCCACTATACCGGCAAAGTGG
TCTGGACTCCGCCGGCCATCTTCAAGTCCAGCTGTGAGATTGATGTGCGC
TACTTTCCCTTCGATCAGCAGACCTGCTTCATGAAGTTCGGCTCGTGGAC
CTACGACGGTGATCAGATCGATTTTGAAGCACATCAGCCAGAAAAACGAC
AAGGACAACAAGGTGGAGATAGGCATCGACCTGCGTGAGTACTATCCCCA
GTGTGGAGTGGGACATTCTCGGCGTTCGGCTGAGCGGCACGAAAAAGTAC
TATCCCTGCTGTGCCGAACCGTATCCGGATATCTTTCTTCACCATCACCC
TGAGGCGAAAGACTCTCTTCTACACGGTTAACCTGATTATTCCATGTGTG
GGCATCTCGTATCTTTCGGTGCTGGTCTTTTACCTGCCCGCCCATTCTGG
CAAGAAAATTGCTTCTGTGCT
FMO06888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRalpha2-RB | 2319 | CG6844-RB | 476..1341 | 1..870 | 4130 | 98.7 | Plus |
| nAChRalpha2-RA | 2387 | CG6844-RA | 544..1409 | 1..870 | 4130 | 98.7 | Plus |
| nAChRalpha1-RC | 11027 | CG5610-RC | 1540..2292 | 98..856 | 800 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24485971..24486200 | 1..230 | 1150 | 100 | Plus |
| 3R | 32079331 | 3R | 24487423..24487603 | 386..566 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 24487130..24487285 | 230..385 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 24488457..24488611 | 573..728 | 620 | 97.5 | Plus |
| 3R | 32079331 | 3R | 24488786..24488914 | 735..863 | 585 | 96.9 | Plus |
| 3R | 32079331 | 3R | 24407324..24407443 | 560..441 | 270 | 81.7 | Minus |
| X | 23542271 | X | 8307006..8307182 | 385..209 | 240 | 75.7 | Minus |
| 3R | 32079331 | 3R | 24405146..24405243 | 856..759 | 235 | 82.7 | Minus |
| 3R | 32079331 | 3R | 24421743..24421827 | 182..98 | 230 | 84.7 | Minus |
| 3L | 28110227 | 3L | 4433721..4433795 | 492..566 | 225 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:06:59 has no hits.
FMO06888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:19 Download gff for
FMO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRalpha-96Ab-RA | 544..1409 | 1..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:27 Download gff for
FMO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRalpha-96Ab-RB | 367..1232 | 1..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:13 Download gff for
FMO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAChRalpha2-RA | 544..1409 | 1..871 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:13 Download gff for
FMO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24485971..24486200 | 1..230 | 100 | -> | Plus |
| 3R | 24487131..24487285 | 231..385 | 100 | -> | Plus |
| 3R | 24487423..24487603 | 386..566 | 100 | -> | Plus |
| 3R | 24488452..24488611 | 567..728 | 96 | -> | Plus |
| 3R | 24488781..24488920 | 729..871 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:19 Download gff for
FMO06888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20314174..20314333 | 567..728 | 96 | -> | Plus |
| arm_3R | 20314503..20314642 | 729..871 | 95 | | Plus |
| arm_3R | 20311693..20311922 | 1..230 | 100 | -> | Plus |
| arm_3R | 20312853..20313007 | 231..385 | 100 | -> | Plus |
| arm_3R | 20313145..20313325 | 386..566 | 100 | -> | Plus |
