FMO06890.5prime Sequence
1122 bp (910 high quality bases) assembled on 2008-10-01
> FMO06890.5prime
CAGTCGACATGCGTAGACGCGGCGTATACGTGATGCTGACGCTGTGCGGG
GTTTTAACCGCTGGGCTAACCGCCTTTCTTGTGATATTCCTCACCGGCGG
CCAGGGTGCCGATGCGTCCGAAACAGCTACGGTGACAGTGGAACTGTATA
ATGGCCAGGGGACGGTTCTTGGCAACTATGCCTACACAGCCTGGACGGAT
CGAGCCTTTATGCAGTTTCGGGGCATCCCCTTTGCCGAACCACCAATAGA
GGAACTACGTTTTCGGCCACCTGTGGCGCGCTCACCATGGACAGGCACCC
TCAACGCACTGAACTTTGGACAACGCTGCCCGGTGATAACAAATCTAGAT
AGTCAGATGTCTGATGCGGAACTCGAAGATTGCCTCACTCTGTCGGTATA
CACTAAAAATCTTTCTGCTAGCCAGCCTGTAATGTTTTATATCTACGGCG
GCGGCTTTTACAATGGCTCCTCCGAGGACCACCCACCGAACTACCTTCTG
GAAAAGGATGTTGTCCTAGTTGTACCTCAGTACCGAGTCGGAGCCCTCGG
CTGGCTATCGACCTACACGGAAGAGCTGCCCGGCAATGCGCCCATAGCCG
ATATCCTTTATGGCCCTCGACTGGGTGCAAATGCACATAAGTAGCTTTGG
CGGTGACCCTCAGAAGGTTACCATTTTTGGGCAGAGTGCCGGCGCTGGAG
TAGCCAGTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATATGTTCAAG
AGAGCGATTGTGCAGTCAGGTTCGATCTTTCGCCAGCTGGGCAATCAACA
AGGATCCGAAGGTACAATCTAGACGTATCTGTATTCAGTTGGGATGTCTG
GCTGTGAACAACACGATCAGCTTGTGAAGTGTATTCAAAAGCGAAAGTTA
TGACATTCTAAAGGCCACGGCCTCAGATCCTTTCCGCCGATTGTGGGAGA
CCTTCCCGCACCCTCCCACAACGCCCAATGAGCTGGTGAAAAGCTTATCG
AGAACGATTCTATATTCTGACCGGAATCACTCCACACGATGGATCCTTTT
GGGCTAACAAGCTTATTAGAATGGCGCTGGACTGCCACGGTGGCCCATGG
TGAGTTTCTATAGTGTCCTCTC
FMO06890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-Q-RA | 1827 | CG7529-RA | 45..1140 | 9..1106 | 4810 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21502464..21503105 | 411..1049 | 2490 | 95.7 | Plus |
| 3L | 28110227 | 3L | 21501465..21501722 | 9..266 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 21502165..21502309 | 266..410 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:47 has no hits.
FMO06890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:16 Download gff for
FMO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 37..1054 | 1..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:18 Download gff for
FMO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-RA | 29..1046 | 1..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:37 Download gff for
FMO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 37..1054 | 1..1013 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:37 Download gff for
FMO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21501457..21501722 | 1..266 | 98 | -> | Plus |
| 3L | 21502166..21502309 | 267..410 | 100 | -> | Plus |
| 3L | 21502464..21503078 | 411..1021 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:16 Download gff for
FMO06890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21494557..21494822 | 1..266 | 98 | -> | Plus |
| arm_3L | 21495266..21495409 | 267..410 | 100 | -> | Plus |
| arm_3L | 21495564..21496178 | 411..1021 | 96 | -> | Plus |
