FMO06891.5prime Sequence
1149 bp (939 high quality bases) assembled on 2008-10-01
> FMO06891.5prime
CAGTCGACATGAAGTTCGCCGAGCACCTGACGGCCCACATAACGCCCGAG
TGGCGAAAGCAGTACATTAACTATGAGGAAATGAAAGCCATGCTGTATGC
AGCCATCGAACAATCGCCCTCCGCAGAACTCGTGGAGCGCGAGATGGTGA
CGCGATACTTTGCCAAATTCGATGAGGAGTTCTTTCACTACTGCGACAAG
GAGCTGGCCAAGATCAACACATTCTACTCGGAGAAGATGGCCGAGGCGAC
ACGCAAATATGGCAGTCTGCGCAGCGAGTTGACCGAAGCCCTGGAAATGG
GACACCCAAAGAAACTGCCCGCGTGGAAGAGGCGAACGCCGCTGGGCAAG
AAGAATGTGCCGGCGCGCAAGATACAGGATCTCAAGTTGGCATTTAGTGA
ATTTTATCTGGGACTGATACTGCTCCAGAACTATCAGAACCTCAACTTCA
CGGGTTTCCGTAAGATACTTAAGAAGCACGACAAGTTGCTGAGCGTCGAC
TATGGTGCACGTTGGCGCACGGATCACGTGGAGGCAGCCCACTTTTACAC
CAACAAGGACATTGATCGGCTGATCCAGGAGACGGAGCAGGCTGTTACCC
AGGACATCGAGGGAGGAGATCGTCAGAGGGCAATGAAGCGGTTGAGGGTA
CCACCACTGGGGCGAACAGCAGAGTCCTTGGACGACCTTCAAGGTTGGTC
TCTTTTCTGGCGCCTTTGTGGTGCTCTTCATTACGGTTGTGATCGCTGCC
ATGTTCTACGGATTCGGCGAGACTGGCGGGCCGGAATGAGGATGTTCCGC
GCACCATTCCTCATCATCGAATGCCTCTTCCTTTGGGGCGTCAATGTCTA
CGGCTGGAGGTCGTCCGGTGTGACCAACGTCCTCATCTTTGAGTTGGATC
CACGAAATCACCCTGGTCCGAGCAAAACATCATGGAAGTGCCACCGTGTT
TGGAGTTATCTGGGCCCTGCTGCGTCCTGAGCTACATCTTTTGGCGATCC
CCTCGCATCCACCAGTACGCAGCTCCGCCTTTGGCCTCATACCAATTGAT
GGCTGCCTTTTTCCTGAATCCCACCAGAGTTCCATCATGAGCCCGGTTGG
CCTATAGGATCCTCCTATCGGTAACTCATGGCTCGTTCGCTTTGTAACT
FMO06891.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10483-RA | 2238 | CG10483-RA | 108..1252 | 5..1147 | 5040 | 96.9 | Plus |
| CG7536-RD | 3537 | CG7536-RD | 721..960 | 8..247 | 540 | 81.7 | Plus |
| CG7536-RC | 3494 | CG7536-RC | 306..545 | 8..247 | 540 | 81.7 | Plus |
| CG7536-RD | 3537 | CG7536-RD | 1088..1478 | 384..772 | 370 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5919760..5920753 | 1074..76 | 4380 | 97.9 | Minus |
| 3L | 28110227 | 3L | 5921136..5921209 | 78..5 | 355 | 98.6 | Minus |
| X | 23542271 | X | 18081972..18082143 | 247..76 | 290 | 77.9 | Minus |
| X | 23542271 | X | 18082218..18082288 | 78..8 | 265 | 91.5 | Minus |
| X | 23542271 | X | 18081118..18081349 | 760..528 | 245 | 74.7 | Minus |
| X | 23542271 | X | 18081747..18081844 | 481..384 | 190 | 79.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:44 has no hits.
FMO06891.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:32 Download gff for
FMO06891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10483-RA | 106..1209 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:18 Download gff for
FMO06891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10483-RA | 88..1191 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:29 Download gff for
FMO06891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10483-RA | 106..1209 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:29 Download gff for
FMO06891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5919723..5920751 | 78..1106 | 97 | <- | Minus |
| 3L | 5921137..5921210 | 1..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:32 Download gff for
FMO06891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5912823..5913851 | 78..1106 | 97 | <- | Minus |
| arm_3L | 5914237..5914310 | 1..77 | 94 | | Minus |
