FMO06893.5prime Sequence
1173 bp (952 high quality bases) assembled on 2008-10-01
> FMO06893.5prime
CAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCGGCGGCGGC
GAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAGCTCTTCCT
GGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAACCATCTGG
AGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATGCACTGACG
CACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTGACGCTTTT
CAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTTTGCCGTCC
AGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGGCCGCCCGA
ATCCAGCGGGGTGTTGTGCACATGAAGAGCGGAGAGTACGAGCAAGCGAT
CCAGGACTTTGATCAAGTCCTTCAAGAGGAACCCAACAACGGCTTGGTGC
TGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGGTCCTTGTA
CAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCCATGATCAC
ACAGTTGCTAGAGATCTCGCCGTGGGCTGTGCCCTTCCGGCAGGCTCGCT
CTGATGCCTACATTGCAATCAATGATCCCACTGTTAGCCATTGCTGACTT
GCGACAGGTGAAACCGACTCACCCAGGACAGCACTGAGGGTCACTACAAG
ATTGCACAGCTGCTGTACACAATTGGCCACGCCACAAATGCCTTAAAAAG
AGATCCGCGAGTGCCTGAAGTTCGACCCGGGACACAAGCTCTGCTCCCCT
TCTACAAGAAACTACGAAAGGTGGAAAAGCAGCTGGTTAACGCAGAGCAA
GCGCGTGAGGAGAATCATTTTGCCGAGTGCATACCGCCGGAAAGGCAGTC
CTGCGTACGAGCCGGAAGAGACGATGATCCCGGTATGAGGAAAACAAGGT
GCTTCTGCACTTGCTCACGGGTCGACGAGCATTTGGCAAGGCTTTGCAAC
ACAGTGCAAGGAGGCACTGGAATTTATTGAGGGATGCTTCAGGGTCTTAC
GGGGACTCTGCTTGACCCATTGCCTGGGCCCCGCGAATGTTACGAACAAT
GCCAACACTCCCTTCCAGCCATCTCTTGGACCCTGGAGAGAGAGCCAAAC
CCGCGCGCCTTAAAAAAAGGTTC
FMO06893.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P58IPK-RA | 2217 | CG8286-RA | 417..1554 | 4..1156 | 4755 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9587996..9588795 | 219..1021 | 3355 | 97.3 | Plus |
| 3R | 32079331 | 3R | 9587521..9587636 | 104..219 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 9587358..9587460 | 4..106 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:42 has no hits.
FMO06893.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:12 Download gff for
FMO06893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P58IPK-RA | 415..1451 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:12 Download gff for
FMO06893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P58IPK-RA | 418..1454 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:36 Download gff for
FMO06893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P58IPK-RA | 415..1451 | 1..1043 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:36 Download gff for
FMO06893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9587356..9587459 | 1..105 | 98 | -> | Plus |
| 3R | 9587523..9587636 | 106..219 | 100 | -> | Plus |
| 3R | 9587997..9588795 | 220..1021 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:12 Download gff for
FMO06893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5413078..5413181 | 1..105 | 98 | -> | Plus |
| arm_3R | 5413245..5413358 | 106..219 | 100 | -> | Plus |
| arm_3R | 5413719..5414517 | 220..1021 | 97 | == | Plus |
