FMO06895.5prime Sequence
1137 bp (1006 high quality bases) assembled on 2008-10-01
> FMO06895.5prime
CAGTCGACATGTCCATTGCGAAGCGTGTGCAGCAATGGGCAACGTTCGCG
CGCACTTGGCACATTTACGATTGCACCTGGCAGAATCCATTCGAGTCGGC
AAAACTGGTTAAAACGCATTTATTGGGCCTCCAAAAGCCCATTTACCACC
CAATGATCTCTACTCGCGGCTTGTGCACTTCACACAAACTACTCCCGATT
TACCAAGTACAAAAACGCAACATGGGTCGCTTAGGAGTCGTGGATCCCAG
TTCTTACTCGCAGCCCGATTTGATCACCACTGAGCACAGTGCTCTCAACT
GGAAGATCGACTTTGCAGCAACCAAAATCCAAGGAAGCGTGCTCCATCGC
TTCAAGGTGTTGACTGCCAATCTGGACAAAATTCTCCTTGATGTCCGCGA
CATCAATGTAACCAATGCCACGCTGCTGGCCGGAGGCAGTGAGCTCCCGA
TCAACTTCTTTATCAGCGATGCCGTCGATGATATTGGCCAGAAGCTAACG
CTGGAGTGGCCATCTGGAACGGCTAAGGGAAGCCTTAACGTTCGCATCGA
TTACGAGACTTCAAGCAGCGCCAGTGGGTTGCAGTGGCTGAATCCCACCC
AGACTTTGGGCAAGGAGCATCCTTATATGTTCTCCCAATGCCAGGCAATC
CACGCTCGCTCGGTGATTCCCTGCCAAGACACGCCAGCTGTTAAGTTTAC
CTATGATGCCACAGTGGAGCATCCCAGCGAGCTCACGGCCCTGATGAGCG
CCCTTTATCGATAAGAAGGAACCGGGAAAGACACTATTCAAGCAGGAGGT
GCCCATTCCCGCTTATCTGGTGGCCATTGCCATTGGCAAATTGGTTTCCC
GCCCGCTGGGGGAGAACTCCAGTGTCTGGGCTGAGGAAGCCATCGTTGAT
GCCTGCGCCGAGGAGTTTTCCGAAACAGCTACCATGCTAAGACTGCCACC
TGAGTTGTGTGGTCCGTATGTCTGGAAGCAGTACGATCTCTGGTGATGCC
CCCTCATTCCCCTTTGGTGCATGGAGATCCATGCCTCACCTTCGTACTCC
CATCCTTTGCGGTGATAGTCTCTTGGCCGACGTGTGCTCACCGAGATAGC
CCACGCTGACTGATCTTGGACCCACAGAACTCTGCAT
FMO06895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 2270 | CG10602-RE | 89..1192 | 9..1104 | 5105 | 98.3 | Plus |
| CG10602-RC | 2126 | CG10602-RC | 93..1048 | 157..1104 | 4365 | 98 | Plus |
| CG10602-RD | 2172 | CG10602-RD | 139..1094 | 157..1104 | 4365 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18856332..18856850 | 1046..531 | 2240 | 98.5 | Minus |
| 2L | 23513712 | 2L | 18857177..18857403 | 383..157 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 18856916..18857064 | 532..384 | 730 | 99.3 | Minus |
| 2L | 23513712 | 2L | 18858952..18859077 | 156..31 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:49:24 has no hits.
FMO06895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:32 Download gff for
FMO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..1211 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:16 Download gff for
FMO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RA | 53..1175 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:47 Download gff for
FMO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..1211 | 9..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:47 Download gff for
FMO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18857177..18857403 | 157..383 | 100 | <- | Minus |
| 2L | 18858952..18859075 | 33..156 | 100 | <- | Minus |
| 2L | 18859137..18859160 | 9..32 | 100 | | Minus |
| 2L | 18856275..18856848 | 533..1099 | 96 | <- | Minus |
| 2L | 18856916..18857064 | 384..532 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:32 Download gff for
FMO06895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18856275..18856848 | 533..1099 | 96 | <- | Minus |
| arm_2L | 18856916..18857064 | 384..532 | 99 | <- | Minus |
| arm_2L | 18857177..18857403 | 157..383 | 100 | <- | Minus |
| arm_2L | 18858952..18859075 | 33..156 | 100 | <- | Minus |
| arm_2L | 18859137..18859160 | 9..32 | 100 | | Minus |
