FMO06896.5prime Sequence
1100 bp (808 high quality bases) assembled on 2008-10-01
> FMO06896.5prime
ATTATACGAAGTTATCAGTCGACATGGGTGCCTATTTGTCCCATCCGAAA
ACGGATAAAACATCCACAGATCAGTTTAATGAATTGCTAGCCGTTGGAGC
TAGCTCTATGCAAGGATGGCGGAACAGCCAAGAGGATGCACATAATTCTA
TTTTAAATTTTGACAACAACACATCGTTTTTTGCTGTGTATGATGGTCAC
GGCGGAGCTGAGGTAGCGCAATATTGTGCTGACAAGTTACCACATTTTCT
TAAAAACCTTGAAACCTACAAAAATGGACAATTTGAAGTGGCACTCAAGG
AAGCATTTTTGGGATTTGACAAAACGCTGCTTGATCCATCGATAGTCAGC
ATACTAAAAATATTGGCTGGGGAACACAACTTCGTGGATGCCGAAGCGGA
CGATTACGAAGAAGAAGATTTAGCTGAATTGCAAGAGGAAAGCAATTTAC
CACTAAATGAAGTTCTGGAAAAATACAAAGGTCTTCCGCAAAAAAAAGAC
TTGGATCTTAAGAGTTCTGACCATAAAGAAAATTTCAAAATGCGCTCTCC
ATATTTTCGCGGGCGCCGAGCTGCAGCATTAGCTGCTGAAGCTACTAATA
AAGCTGTAATGGACCCCTCTGCAAAGCCAGATGGTTCTTCCACCTCCGCA
GCAGCGGGCTGCAGCAGCGCTATCCGCCGATGGTGTAACTAATTCCCGTA
ATCCGAGCAATGTTGTAAATCCCTATGGCTGGGGGCTGATAGCAATACCA
CTACCAGTTATCAACGATTTATCCACCAAGAATGCTGCATTAAAAGATGA
TTCTGTTAATGACCAAAATGAGGGCTCAAATGGAACCGATTTTCAAGCAT
ACGTTGGTTTTCTTCCAATATAAAAAATTATTCGCTACTGGTTCTAACGC
ATTGACCGATTAAATCAGTCCCTCAAAAACGATTCCCCACTTCTCCTTCA
AGCCAAGAGTTGAAGGATATATACCCACTCCCCAAGACGAAGTATTCCAC
GACAAGATGCGGAACTTTGAGAAAAAAGGATTATGTCAAAATCCTGAATA
CTTTCTCCCCCAAAAATCTCTAATCGCCCTGTAAATGGAGTACCCCCGGT
FMO06896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10417-RB | 2361 | CG10417-RB | 116..1142 | 24..1053 | 4250 | 95.5 | Plus |
| CG10417-RA | 2538 | CG10417-RA | 293..1319 | 24..1053 | 4250 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5361774..5362569 | 932..133 | 3480 | 97.4 | Minus |
| 2R | 25286936 | 2R | 5362627..5362738 | 135..24 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:41 has no hits.
FMO06896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:30 Download gff for
FMO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 293..1201 | 24..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:23:01 Download gff for
FMO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RB | 112..1020 | 24..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:18 Download gff for
FMO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 293..1201 | 24..935 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:18 Download gff for
FMO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5361770..5362567 | 135..935 | 98 | <- | Minus |
| 2R | 5362628..5362738 | 24..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:30 Download gff for
FMO06896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1249275..1250072 | 135..935 | 98 | <- | Minus |
| arm_2R | 1250133..1250243 | 24..134 | 100 | | Minus |
