FMO06901.5prime Sequence
1155 bp (1053 high quality bases) assembled on 2008-10-01
> FMO06901.5prime
CAGTCGACATGCTGAAGAGAAACCCATTCCAGTACACACTGTGGAGCAAC
CTAATAATGATCACCCAAGGCGACATGGCTTGTTGCAACGTGTCCGCTGT
GCTCCGGATTTACGAGTACAGCATGCGCCGCATGCATGTGGGACACAACG
ATGAAATAACCCGAAGATTCATCATTAAGGAGACTGATGTGATAATGCTA
AAACTTTTTCACAATTGCTTACTATTCCTACGCCAATCGGGCCATACTAA
CTGGATGTTTGCTCTGATTCGTTTGTCTATGGAGTTGAATTTCCCCTACC
TGACGTTCGAATGCCTACAAGCACATGCAGGAAGAGAAAAAGCATTGATT
GGATTCGAGGAAGTGGTGCTGCGTTCGGGAATGCCGATGCCCGAGATCTG
GACGCGTGTGGAGCAGCTCAGACAGGCATACTGCTTCCTGCCGTTGAAAG
ACAAGCTGGCTTCGTCGACTAATGTCTTCAAAAACAAGATGAACGCCGAA
CGATACTTTTGCAGCGACAAACTTGTCCCATATGTACACGCACTCAAGTC
GCAGAATAATCGTCTGCACCTGGTGCTCGTGGTTGTTCAACTAATGAAAT
TGCCCCTGATTCGCAGCGCTAGTTTGGCGGACAAATTGAATCCTTGCATC
GAGGACTTCGGCGAGTCTGAGGCCATTGAAATGCTTTTCGCTGCCATAGT
AGATAGGCACTCCTATGCAGTGGCTTCGTTGCAATATCAATTTGATGCAG
CCATGATCGACTTAGCCAGAGAGATGTCCGTGACGCCCAGCTACATGCCG
CATCTTGTTGGCCATAAACTGTATGCGGATACCGTGAGTAATATGCTACT
CAATGCGTCGAAGTCTTTATCGGCGAGGAGTCCAAGCGACGATTGTTGCT
TATTCTGTATTTGCGATTCCAAAAACTATTATAGTGCTGCACCAGTCCAT
GGGCAAGCTAACGAAAATTCTTTAAGATAACCGACACGGATGCGCAAACT
GATCATTTGACGGAGACCGAATGTTATAGTTCTACCGGGACAGGCCTGTG
CGAATGAGGCTAGCATACCGACTGGGCCTTTCATATTTCGAGATCTCCAC
AAAAAATCGGAAAGAATCCAGCTGCATATGGCTGAACCAATGCCATCTCA
TTAGT
FMO06901.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5877-RD | 3171 | CG5877-RD | 885..2023 | 9..1127 | 5080 | 97.5 | Plus |
| CG5877-RB | 2975 | CG5877-RB | 164..1302 | 9..1127 | 5080 | 97.5 | Plus |
| CG5877-RA | 3696 | CG5877-RA | 885..2023 | 9..1127 | 5080 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15294358..15295372 | 9..1016 | 4730 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:41 has no hits.
FMO06901.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:30 Download gff for
FMO06901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RA | 880..2029 | 2..1134 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:22:58 Download gff for
FMO06901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RB | 159..1308 | 2..1134 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:26 Download gff for
FMO06901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RA | 880..2029 | 2..1134 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:26 Download gff for
FMO06901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15294353..15295502 | 2..1134 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:30 Download gff for
FMO06901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15188386..15189535 | 2..1134 | 96 | | Plus |
