FMO06904.5prime Sequence
1129 bp (982 high quality bases) assembled on 2008-10-01
> FMO06904.5prime
CAGTCGACATGTCAGCACGCCGCGTCACATTGAACACACGCGTTTCGCGC
GCCTCCACCTCCACGCCGGTGGGCGGGGCATCCACCTCGTCAAGGGTGGG
CGCCACCTCACCCACCTCGCCCACGCGCACCAGCCGGCAGCAGGAGAAGG
AGGAACTGCAGCATTTGAACGATCGCCTGGCCTGCTACATCGATCGCATG
CGCAACCTGGAGAACGAGAACAGCCGGCTCACCCAGGAACTGAATCTCGC
CCAGGATACCGTCAACAGGGAGACCTCTAATCTGAAGGCGGTCTATGAGA
AGGAGCTGGCCGCCGCTCGCAAGCTGCTCGATGAGACCGCCAAAGAGAAG
GCCAAGCTTGAGATCGATATCAAGCGTCTGTGGGAGGAGAACGACGACTT
GAAGCCCAGACTCGACAAAAAGACGAAGGAGGCTACCGTGGCAGAGAACA
ATGCCCGCCTGTATGAGAACCGCTACAACGAGGTGAATGGCAAGTACAAC
CAATCGTTGGCCGATCGCAAGAAGTTCGAGGATCAGGCCAAGGAGCTCGC
TCTGGAGAACGAACGCCTGCGCCGCCAACTGGATGATCTTCGCAAGCAGC
TGGAGGCGGAGACGCTGGCCCGCGTCGATCTGGAGAACCAGAACCAGAGC
CTGCGCGAGGAGCTGGCCTTCAAGGATCAGGTGCACACCCAGGAGCTCAC
CGAGACCCGATCCCGTCGCCAGATCGAGATCAGCGAGATCGATGGCCGAC
TGTCGCGTCAATACGAGGCCAAGCTGCAGCAATCGCTCCAGGAACTGCGT
GATCAGTACGAGGGTCAAATGCGCATCAATCGCGAGGAGATCGAGCTGCT
GTACGACAATGAGATCCAGAACCTCAAGGCTGCTGCCAATAGGGCTGCCA
AGGATCCGCTTCTTGCCACCGAGGAGTCCGTCTCATGCGCACCAAGATCG
ATGGCTTGAACGCCAGCTACAGAATCTGGAGGACACGATGCTGGCTTGAA
TGCTCGCATCGGAGCTGGAGAACCTCTTGAACCGGAGCGCAGTGCCACAC
CAGTCTCGCCTCTTTTGAAGCCGACTACGCGTATGCGCAACGAGATGCTC
CCACCTGCAGAAATACAGCTCTAGTGCAA
FMO06904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RB | 2450 | CG10119-RB | 147..1262 | 9..1110 | 5065 | 97.9 | Plus |
| LamC-RA | 2367 | CG10119-RA | 147..1262 | 9..1110 | 5065 | 97.9 | Plus |
| Lam-RD | 3191 | CG6944-RD | 564..1046 | 360..842 | 215 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14572252..14572849 | 1002..408 | 2720 | 98.2 | Minus |
| 2R | 25286936 | 2R | 14575225..14575625 | 409..9 | 2005 | 100 | Minus |
| 2L | 23513712 | 2L | 5543491..5543580 | 144..233 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:08 has no hits.
FMO06904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:09 Download gff for
FMO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..1268 | 9..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:11 Download gff for
FMO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 178..1299 | 9..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:55 Download gff for
FMO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..1268 | 9..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:55 Download gff for
FMO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14572253..14572847 | 410..1001 | 98 | <- | Minus |
| 2R | 14575225..14575625 | 9..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:09 Download gff for
FMO06904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10459758..10460352 | 410..1001 | 98 | <- | Minus |
| arm_2R | 10462730..10463130 | 9..409 | 100 | | Minus |
