FMO06905.5prime Sequence
1149 bp (960 high quality bases) assembled on 2008-10-01
> FMO06905.5prime
CAGTCGACATGAGGAGCGTCGAGGAGATCAAAGCGGAGTACCCGCTGCAC
TGGCACATCTGGCACAACGAACTGGAGCAGCTGCAGGCGGCCATCGACCA
GAACGATAAGGAGAAAATCGATCCCCGCGGCCGGACGCCACTGATGCTGG
CTGTGAGATTGGCCAATTTGCCATGCGTTAAATGCCTTCTGGCGGCCAAA
TGCAATGCGACCTATGAGTACGAAGGCTGGTCGATTGTCCAGGAAGCGGT
CTGCACCGGCGATGTGGACATACTGACGGCCATCATCGAAGTCCGGGATC
TCCAGCGTCATGTCCAGCGGGTTACGCATGTGCCTAAGCTGCTGCAGCAC
CTATTGGACGCACCAGATTTCTACATCGAGATGAAGTGGGAATTCACCTC
CTGGGTGCCTCTGATGTCGCGTCTCTGTCCCAGCGACACCTACAAGGTCT
ACAAGCGGGGAGCCAACGTCCGGATAGATACCACCCTGCTGGGCTTCGAC
AACAACACCTGGCAACGGGGCAATCGCTCTTACATCTTCAAGGGGGCCAA
AGAAACTGCCACGATGATCGAGATCGATCACGATACAAACGAAGTAATGG
TGGAGGAGATGAGCAGCGATATCGGTGATATTGTGGCCATTCCACCAGCC
TTGGGCACCGTGAGGGCGCGCCTCAATGCCCCGGTGATCACGAACAACAT
CGAGATGGACAAGATTAGCTTCGAGCGCAACAAGTGCGGCATATGGGGAT
GGCGTAGCGAGAAATCTGAGATGATCAACGGCTACAACTGCAAGGTGTAT
GGGGCCAGCAACGTGGAGTTTGTTACAAAGACGCGAATGGATCACCTTAG
CGAGGAGCAATTAGGAACAAGAAGCGAGGACTCCCACTGCATAGGCTGCT
GGGGATTTGCTGATGGAGGATATGTGTCACCCACTGATGCTGCTGCGGCA
CTAAAAGATCGTACCCATCGGCCCCGGGTGGAGGAAGCTTCAACGCTGGC
GTTGAAAATGGTGGCCGAAACTCACCAGCCCCTGGAAATCAAAGCAACGG
AAGCTCCGCGGGGTGCGTCGGGCACCAGTACTCAAGTCTTTCGTTACTTC
GGAGGATTATTTTATTCCAGGGAGTTTGGACTCTTACCGGAGGGATAGT
FMO06905.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RE | 2823 | CG15118-RE | 127..1246 | 9..1128 | 5130 | 97.8 | Plus |
| CG15118-RB | 2528 | CG15118-RB | 127..1246 | 9..1128 | 5130 | 97.8 | Plus |
| CG15118-RA | 2475 | CG15118-RA | 74..1193 | 9..1128 | 5130 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19136323..19136637 | 549..235 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 19135945..19136255 | 860..550 | 1555 | 100 | Minus |
| 2R | 25286936 | 2R | 19136695..19136830 | 234..99 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 19135472..19135617 | 1114..971 | 480 | 93.2 | Minus |
| 2R | 25286936 | 2R | 19136951..19137043 | 101..9 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 19135685..19135772 | 962..873 | 245 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:43 has no hits.
FMO06905.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:49 Download gff for
FMO06905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 65..1173 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:26 Download gff for
FMO06905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 116..1224 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:20 Download gff for
FMO06905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 65..1173 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:20 Download gff for
FMO06905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19136951..19137047 | 1..101 | 96 | | Minus |
| 2R | 19135480..19135625 | 963..1105 | 91 | <- | Minus |
| 2R | 19135685..19135780 | 866..962 | 91 | <- | Minus |
| 2R | 19135939..19136255 | 550..865 | 99 | <- | Minus |
| 2R | 19136323..19136637 | 235..549 | 100 | <- | Minus |
| 2R | 19136695..19136827 | 102..234 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:49 Download gff for
FMO06905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15023444..15023760 | 550..865 | 99 | <- | Minus |
| arm_2R | 15023828..15024142 | 235..549 | 100 | <- | Minus |
| arm_2R | 15024200..15024332 | 102..234 | 100 | <- | Minus |
| arm_2R | 15022985..15023130 | 963..1105 | 91 | <- | Minus |
| arm_2R | 15023190..15023285 | 866..962 | 91 | <- | Minus |
| arm_2R | 15024456..15024552 | 1..101 | 96 | | Minus |
