FMO06907.5prime Sequence
1146 bp (1056 high quality bases) assembled on 2008-10-01
> FMO06907.5prime
CAGTCGACATGTCGGATCTCGATTGGGACGATCCAAACTATGTCGAGAAG
CCGGCGGTGCATCAGGAGTACTCCAAGCCGAATAATAAGTACGAAAGGAG
TATCCGGCGAGATGGTAACTCACGTGCATACAAAGGAGATCGAAATGACT
ACGGCGGAGAAGGACGAGGCTATCGCGCTAAACGCAATGATTATGGCGGT
GGACGTCGCGACAATCGGGATAATTACGGAGCAGGGCATCGTGATAGTCG
CGACAGTGCCGGGGGAGGAGGAGGAGACTTTAGCGAATCCTTGAGCATCG
CTTCCGAGATGGTCGGAAAAGTTATTGGAAGAGGGGGCTCCAATATATCC
CGGATCCAGAACGACTTCAATGTCCGCGTCAAATTGGACAAGTGCGACTT
AATAGTCAAGATAACTGGTAGCATCCAGAGCAACGTCATCGATGCTATCA
ATCACGTTCGCAAGCAGGTCACTAATTCGGGTGATAGGGGACAGGATCGC
GATAATAGGGACCACGGTTCCAATGAAAGATATGACGGAGGCGGATACGA
CAGATACAAGGGGAATAGCTACGAGTTCAATCCCACTTCTTCTGAGTCCA
ATAAGGACAATGGGGATCTTACGGGCATCATTGATTGGGAAGCCCTGAAT
AAAGCTTCGATAGCAGCTACTGCGGCACGGTGGTCCAAGTGTCCACCGCT
AACAAAGAACTTTTACAAGGAGGCTCCTGAAAGTGGCCAATCTGACAAAA
TCGGAGATTGAGCGCATTCGCGAGGAGAACAACAAGATAACAGTTTTCTT
ATGTTTTCGAGCCAAAGGAGGGGGAAACGTCACCGCCTATTCCAAATCCA
GTTTGGACCTTCGAGCAATGCTTTGCCGATATCCAGATATGCTTGAGGAG
ATTACCAAAATGGGCTTCTCCAAGCCCTCGCCCATCCAATCGCAGCGTGC
CCATTCTCCTCAAGTCATGACATGATCGGTATCGCCAAACGGGCCCTGGC
AATCACTAGCCTTCTTTGCCCGGAATGATTCCAACCGAGTACAAAGCACG
CCAGGGGCACGAGGGGCGGAGCTAACGTTCTGTGCCTGCACCACTCGGGA
TGCCTCTGCCAATCGAAATGAGTCAGAGTACTCCTTCTGGAATGAC
FMO06907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7878-RA | 2375 | CG7878-RA | 129..1253 | 9..1120 | 5080 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8122853..8123503 | 9..659 | 3255 | 100 | Plus |
| 3R | 32079331 | 3R | 8123558..8123990 | 659..1082 | 1490 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:36 has no hits.
FMO06907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:46 Download gff for
FMO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..1231 | 9..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:45 Download gff for
FMO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 155..1257 | 9..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:17 Download gff for
FMO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..1231 | 9..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:17 Download gff for
FMO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8122853..8123503 | 9..659 | 100 | -> | Plus |
| 3R | 8123559..8123990 | 660..1082 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:46 Download gff for
FMO06907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3948575..3949225 | 9..659 | 100 | -> | Plus |
| arm_3R | 3949281..3949712 | 660..1082 | 95 | -> | Plus |
