Clone FMO06908 Report

Search the DGRC for FMO06908

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:69
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNak-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06908.5prime Sequence

1147 bp (1029 high quality bases) assembled on 2008-10-01

> FMO06908.5prime
CAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTGCCTCGAAT
CCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTATCCATTAG
CGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGTTGAAGCCT
GGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTGAGGATCAC
ATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGTCAAGGAAG
CATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACCAACGGAGC
AGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTGGTGCAGTG
CCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCGCAGGTCTC
CGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGGACTGCGCG
AGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCGGCGTTTCA
TCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTGGTAGCGGG
AGGAGCAAACACCGCCACCTCTTCCAACTCATCCAAGTGGATGCTCTCCC
CCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCAGTAAACTC
AAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGAGCTGGAGA
AGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAACAAGTACG
AGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCGATTCCGAG
GCTTCGGAGTTCTTTCAACAAGACAGCGATGAAGGAGGTGGGGGCATCTT
TAGGCAAATGCAGATGGTGACAAGCAATTTGCCGGAAACCATCCATAAAA
TTCAACAGGTTGCCTATCACAAGTGGACAGACAGCTCATCTGCCATTGTG
AAGAAACTTTCGCGATAAGACCAGAACCCACACAGCTGCCCATCAGCGGC
CCAACAACTAATCTCATGGCTGCCGCGGTAGCTGCACAGCTGAAAAGCTG
CCAAGCGCCGATCCGACGTGATCCATTCGGATCTGCCAGTGACTGCGGCA
AGGAATTATGACTGTTGAACGAATTCCCTCGCCCGACACAAGCCCAG

FMO06908.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Nak-RD 5364 CG10637-RD 1943..3095 8..1144 5090 97.2 Plus
Nak-RA 5196 CG10637-RA 1943..3095 8..1144 5090 97.2 Plus
Nak-RE 4280 CG10637-RE 1943..2415 8..480 2365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18960116..18960682 1038..479 2395 98.1 Minus
2L 23513712 2L 18963170..18963412 250..8 1215 100 Minus
2L 23513712 2L 18962885..18963115 480..250 1155 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:20:04 has no hits.

FMO06908.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:07 Download gff for FMO06908.5prime
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1939..3098 1..1147 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:39 Download gff for FMO06908.5prime
Subject Subject Range Query Range Percent Splice Strand
Nak-RB 81..1240 1..1147 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:31 Download gff for FMO06908.5prime
Subject Subject Range Query Range Percent Splice Strand
Nak-RA 1939..3098 1..1147 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:31 Download gff for FMO06908.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18959998..18960680 481..1147 95 <- Minus
2L 18962885..18963115 250..480 100 <- Minus
2L 18963171..18963416 1..249 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:07 Download gff for FMO06908.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18959998..18960680 481..1147 95 <- Minus
arm_2L 18962885..18963115 250..480 100 <- Minus
arm_2L 18963171..18963416 1..249 98   Minus