FMO06908.5prime Sequence
1147 bp (1029 high quality bases) assembled on 2008-10-01
> FMO06908.5prime
CAGTCGACATGGGCGACGGTCAGCAGACTTTGGCTAGTGCTGCCTCGAAT
CCCGGGATATATGCATCTTCAACGGCAAACTCAGCCGCGGTATCCATTAG
CGAATTAATGAAACCAGGACAAACGGCGGTGGAAAAGCGAGTTGAAGCCT
GGAATCCGTTCGAAGAGGAGCAGCCTTTCAGCCAGATGACTGAGGATCAC
ATCTTTGAGGCGGAGTTCGACAAGATACGACAGAGAGGCAGTCAAGGAAG
CATCACAGCAAAATCGGCATCCACAACTTCCACGCTAACACCAACGGAGC
AGATTCCCTCTGCGGTTGTGGCTCCTGTTACAGCTGCTCCTGGTGCAGTG
CCTCCTCCGCCGATTGCTGCCGCTGTGTCTCCTTACCCGTCGCAGGTCTC
CGAGGATCCATTCGGATCGGCGCCATTCAGTTTGCCACCCGGACTGCGCG
AGAAGGCGAGCTCGCTGCGCAAAACCGGAGCGAAATTCATCGGCGTTTCA
TCTGGTGGAACAGGAGGCGGAGTGGCCACGCCTATCGGCTTGGTAGCGGG
AGGAGCAAACACCGCCACCTCTTCCAACTCATCCAAGTGGATGCTCTCCC
CCACCCTGGAGGTTTCCAGCGAAGAGAAGACCTCGCTTATCAGTAAACTC
AAAACAGACTCAGAATGTGGAATTCCAGGCGCTGTTGGAGGAGCTGGAGA
AGGTGTCTCTGGTTATGTTAAGCTACCTGTAGAAGATCGCAACAAGTACG
AGAAGCTGCGCAGCAAAGATCAGCCGACTTCCGATGACTCCGATTCCGAG
GCTTCGGAGTTCTTTCAACAAGACAGCGATGAAGGAGGTGGGGGCATCTT
TAGGCAAATGCAGATGGTGACAAGCAATTTGCCGGAAACCATCCATAAAA
TTCAACAGGTTGCCTATCACAAGTGGACAGACAGCTCATCTGCCATTGTG
AAGAAACTTTCGCGATAAGACCAGAACCCACACAGCTGCCCATCAGCGGC
CCAACAACTAATCTCATGGCTGCCGCGGTAGCTGCACAGCTGAAAAGCTG
CCAAGCGCCGATCCGACGTGATCCATTCGGATCTGCCAGTGACTGCGGCA
AGGAATTATGACTGTTGAACGAATTCCCTCGCCCGACACAAGCCCAG
FMO06908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nak-RD | 5364 | CG10637-RD | 1943..3095 | 8..1144 | 5090 | 97.2 | Plus |
Nak-RA | 5196 | CG10637-RA | 1943..3095 | 8..1144 | 5090 | 97.2 | Plus |
Nak-RE | 4280 | CG10637-RE | 1943..2415 | 8..480 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18960116..18960682 | 1038..479 | 2395 | 98.1 | Minus |
2L | 23513712 | 2L | 18963170..18963412 | 250..8 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 18962885..18963115 | 480..250 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:04 has no hits.
FMO06908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:07 Download gff for
FMO06908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RA | 1939..3098 | 1..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:39 Download gff for
FMO06908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RB | 81..1240 | 1..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:31 Download gff for
FMO06908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nak-RA | 1939..3098 | 1..1147 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:31 Download gff for
FMO06908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18959998..18960680 | 481..1147 | 95 | <- | Minus |
2L | 18962885..18963115 | 250..480 | 100 | <- | Minus |
2L | 18963171..18963416 | 1..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:07 Download gff for
FMO06908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18959998..18960680 | 481..1147 | 95 | <- | Minus |
arm_2L | 18962885..18963115 | 250..480 | 100 | <- | Minus |
arm_2L | 18963171..18963416 | 1..249 | 98 | | Minus |