FMO06909.5prime Sequence
959 bp (959 high quality bases) assembled on 2008-10-01
> FMO06909.5prime
CAGTCGACATGGCCGAGGACTTTGATGTGGAGGCGATGCTCGAGGCGCCG
TACATGAAAAACAATGTCAGTGCGGGCAGCGGTGGAAGTGGTGGACGCAA
GCGCAGCGGCAGCAGTCCAGGCGGCGGCGGTGGACACGATGACGACTACG
CCGAGAATGGTCCGCGGAACGGCAGCGGCGGCGGAAGCTCACACAAAAAG
CAAAGCAAACGATCCCGGAGTAGAAGCGGCTCGCGTGATGGCAAATCTCG
ACGAGATCGCGGCAATGAACGCAGCAGTCATCGGGACAAGGATAAGGAGC
GCGATCGTAACCGCGACGGCGGCGACCGAGATCGACACCGCAGGGAAGGT
GGCGATCGAGATCGGGAGCGGGAACGTGAGCGCGAACGCGACAGATCTCG
TCGGAGTCGTTCGCGTGATGAGCGCGGTGGAGGTGGTCGCTACGGCGATC
GTGACAAGGATCGCCGCTCGCGAGATCGACGCGGCGGCAGCAAGTCGTTG
CAAGTGGATCGCTCGCGGGACAAGCGTCGACGCAGTCGTTCCCGCGATCA
GCAGCGCAAACGGCTGAGTCCGATCCGTGAACGCAAGCGCAGCCATTCCC
GCTCGAGGGACAGAAATAGCCGCCGTCGGGGAACCAATTCTCCGCGACGC
CGCTCACCACCGAATGGAGCTGATCGCACCACGCCCACCGAACTCAGTCC
CGAGGAGCGGGACGCCCGCACCGTTTTCTGCATCCAGTTGTCGCAGCGAG
TGCGAGCCCGTGACTGGAGGAGTTTTTCTCCAGCGTCGGCAAGGTGCGCG
ACGTGCGTCTATCACATGCAACAAGACGAAACGCTTCAGGGCAATTGCCT
ACATTTGAGTTCGATGATCCTGAGTCCGTGGCACTGGCTCTGGGCTTCTC
TGGGCAGCGGCTGCCTCGGTGTACCCTCATTGGTGCACCAACGCAAGCTG
AATAAGAAT
FMO06909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Caper-RB | 2457 | CG11266-RB | 245..1188 | 9..951 | 4440 | 98.5 | Plus |
| Caper-RA | 2128 | CG11266-RA | 181..1124 | 9..951 | 4440 | 98.5 | Plus |
| Caper-RL | 2484 | CG11266-RL | 591..1480 | 63..951 | 4170 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7035636..7036035 | 217..616 | 2000 | 100 | Plus |
| 2L | 23513712 | 2L | 7036185..7036494 | 617..926 | 1270 | 96.8 | Plus |
| 2L | 23513712 | 2L | 7035407..7035562 | 63..218 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 7032965..7033018 | 9..62 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 668..714 | 112..66 | 118 | 72.3 | Minus |
FMO06909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:39 Download gff for
FMO06909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11266-RA | 175..1109 | 4..937 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:31 Download gff for
FMO06909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11266-RC | 234..296 | 4..64 | 95 | -> | Plus |
| CG11266-RC | 727..1599 | 65..937 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:01 Download gff for
FMO06909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caper-RA | 175..1109 | 4..937 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:01 Download gff for
FMO06909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7032959..7033018 | 4..62 | 96 | -> | Plus |
| 2L | 7035407..7035561 | 63..217 | 100 | -> | Plus |
| 2L | 7035637..7036035 | 218..616 | 100 | -> | Plus |
| 2L | 7036185..7036505 | 617..937 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:39 Download gff for
FMO06909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7032959..7033018 | 4..62 | 96 | -> | Plus |
| arm_2L | 7035407..7035561 | 63..217 | 100 | -> | Plus |
| arm_2L | 7035637..7036035 | 218..616 | 100 | -> | Plus |
| arm_2L | 7036185..7036505 | 617..937 | 96 | -> | Plus |
