FMO06911.5prime Sequence
997 bp (993 high quality bases) assembled on 2008-10-01
> FMO06911.5prime
CAGTCGACATGTGGAATGCATTAAGGATTCAGCAGATTTTGCGTCTACTC
CCGATCCTGATTCACCTGTCGCCATACATTTCCGCCCAACAGACGCACAT
TAAATTGGAGCAAGGGGATCTCATTGGGCTCAAGGTCTTTCCGGATGGGA
CACGTGGCGCTGTCTACGCCTTTCTGGGCATTCCCTACGCCCAGGCGCCC
ATCAACGAACTACGATTTGCTCCCGCCAAGCCGAGCTCCAGCTTCAACCG
CACCCTCCAGGCCACCACCATGCAGCCGCTGTGCCCGCAGCTCGCGAACA
CCATCTACGACGAGAGCTCCGATGGCTCCATGCCCAGATCAGTGAGCACC
GACGAGGACTGCCTGTACCTGAACATTTGGACACCGGAATCGGGAATGCG
GTACGGCAAGCTGCCCATAGTGGTCATTGTCACGGGTGAGGAGTTTGCCT
ACGACTGGCCCAGAAATCGCATCAATGGCTTGGATCTGGCCGGAGAGGGC
ATTGTGGTAGTCAGTGTCCAGTACCGAAATAATATCTACGGATGGCTGAG
TCTAGGCGAACAGCATCGTAATGTGCCTGGAAATTATGGCCTAAGTGATG
TTCAGATGGCACTGCGGTGGATTCGAAGGAATGCAGATGCCTTTGGCGGC
AATCCAGATCACATTACTCTTCTGGGTCATGGGAGTGGAGGAGCACCTCT
GGCACTAGTTGCTACTTTGGAGGATTCCAGCCAGGTTAAACAACTGGTGC
TCATGTCACCCGGTCCCATTATGCGAGCCTTGGGTCAGAAATCACCAAAA
ATGGATAGTGGGAAACTGGTCAAGTGCTGGTACAGAAATTGGGCTGCCAA
TTTGAGGAGGCACAACGTCGCCAGTTGATGGGTTGTCTGAGGCGCAAGAG
CCGGGAGGACTTGCTCCGTGGCATACGTGATGTTTTATTAACATGGCAAC
CGGAAGCTCCCAGCTGGGAGTAATACTACCGAAAGATTGCCACTCGA
FMO06911.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2834 | CG12869-RC | 217..1203 | 8..997 | 4710 | 98.7 | Plus |
| CG12869-RB | 3312 | CG12869-RB | 695..1681 | 8..997 | 4710 | 98.7 | Plus |
| CG12869-RA | 2857 | CG12869-RA | 240..1226 | 8..997 | 4710 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14593214..14593986 | 222..997 | 3515 | 98.3 | Plus |
| 2R | 25286936 | 2R | 14592761..14592881 | 8..128 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 14592950..14593043 | 128..221 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:57 has no hits.
FMO06911.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:55 Download gff for
FMO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 232..1225 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:22:53 Download gff for
FMO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 232..1225 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:58 Download gff for
FMO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 232..1225 | 1..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:58 Download gff for
FMO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14592753..14592881 | 1..128 | 96 | -> | Plus |
| 2R | 14592951..14593043 | 129..221 | 100 | -> | Plus |
| 2R | 14593214..14593985 | 222..996 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:55 Download gff for
FMO06911.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10480258..10480386 | 1..128 | 96 | -> | Plus |
| arm_2R | 10480456..10480548 | 129..221 | 100 | -> | Plus |
| arm_2R | 10480719..10481490 | 222..996 | 98 | | Plus |
