FMO06913.5prime Sequence
1165 bp (966 high quality bases) assembled on 2008-10-01
> FMO06913.5prime
CAGTCGACATGACAACCGACGAGAGCATAATGGAGGAGATGCTGGAGAGA
GCAACAAATCCGGCACAGAAAATCGACGAACTGGGCGTGCAAATGTTCTG
CATTGTGGTCAAAAGCAACGCCCAATTGGTGCACAAGGCGCAGGAGATGA
TTGTGGCCAAGGTGCGATCCACAAATGTGACGGAGGCGACGCGAGCGATT
TCGCTGCTGGAGGAGTGCATGACGCAGTGCGGCGACGACTTCCAGGACGA
GGCGTCCAAATTCCGCTTTCTCAACGAACTGATACGCCTGGTATCGAAGA
AGTACAAGGGCGCCGAGACGCCGCACGAAGTGAAGCAGCGGATCATGGAG
TGCCTACTGCTGTGGACCACCGAGTTCCCGCAGCGTCAGAAGATACGCGA
TGCCTACGACATGTTGCGCAAGGAGGGGGACATCGAACACGGCACCACGG
AGGCGGCGGTGGCCAAAAGGGAGAGTGTACTGGGCACTATTGACGAGGCC
ATGTTCGCCAAGCTGATCAAGAGCAATAATCCCGAGAACTTCAAGCGGGC
CAATCTACTGCTGCAGTATCGGATGGCACAGGAGGCGCGTCGCAACGATC
TGCTGGCCCAGCATCGTCTAGTCCTTTGCGAGGTGCAGGAGACGATGCAG
CTGCTCAACCAAAATGCTGGACACCTACGATCCCGCCAACCAGGACGTCA
GCGAAACACTGCACGAGCTATACAAAGAGCTGCAAGAAGCACAAGCCCAT
CTTTTCAGCATCTGCCGCAGCTGCTGGACGATTCCGATGCGCAACTTGTA
GCTGACACTCTGGATGCCAATTGCGCTCTACTGGCCACCATGCAGCGCTA
CAAGCTTCTGGTGCATCGCCCACAAAGGAGCACCGCTGCTGCCTTGACCA
CAAGTGCTCCAACAGTAGCTAGTTCAGTGAAGTCGACGGCCAGCTCGACC
ACAGCACCACTACCTCCATAACGCCCAGTTGCTGAACGAACTGCTCGGCG
ATTTGCTCATCGACGGAAGCAATAAGCTGCAACCTACGCCACCACAAAGC
CTTACGAATGGCCGGGCTAGCGGTTCGAATTCGCGTGGCGATTTAAGTGA
CATCTTTAGCAGCGCTTCTGGCCGAAACACGAGACAACAAGTCAGCCATT
CAGGAAGGCAACTCC
FMO06913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gga-RB | 2360 | CG3002-RB | 111..1227 | 9..1127 | 5125 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9602080..9602675 | 203..801 | 2830 | 99.3 | Plus |
| X | 23542271 | X | 9602743..9603071 | 800..1127 | 1070 | 93.1 | Plus |
| X | 23542271 | X | 9601253..9601411 | 45..203 | 795 | 100 | Plus |
| X | 23542271 | X | 9601140..9601176 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:04 has no hits.
FMO06913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:01 Download gff for
FMO06913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gga-RB | 104..1268 | 1..1165 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:02 Download gff for
FMO06913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gga-RB | 100..1264 | 1..1165 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:44 Download gff for
FMO06913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gga-RB | 104..1268 | 1..1165 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:44 Download gff for
FMO06913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9601133..9601176 | 1..45 | 91 | -> | Plus |
| X | 9601254..9601411 | 46..203 | 100 | -> | Plus |
| X | 9602081..9602675 | 204..801 | 99 | -> | Plus |
| X | 9602745..9603112 | 802..1165 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:01 Download gff for
FMO06913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9495166..9495209 | 1..45 | 91 | -> | Plus |
| arm_X | 9495287..9495444 | 46..203 | 100 | -> | Plus |
| arm_X | 9496114..9496708 | 204..801 | 99 | -> | Plus |
| arm_X | 9496778..9497145 | 802..1165 | 91 | | Plus |
