FMO06916.5prime Sequence
1009 bp (980 high quality bases) assembled on 2008-10-01
> FMO06916.5prime
CAGTCGACATGACCGAGAAGGATACCGTCTCGATGGCTACCGTGCAAATG
AAGCCCGACTATGCGGCTAGCGAGGTCTACAGCACCGCCAGCGAACCGCC
ACCGGCCTACAAGCGCCAGGCGAATTCGGTGAAAATCGCCAAGATCACCG
CCTTCACCATCATCGTGTCAGCCTTCATCCTGGGATCCTTCATCCTGGCC
TCCTCCTACCTGCAGGCCAAGGCCTCGTGCGATCAGGTCCAGGCCCTCGA
CTCGGTGCTGGAAAAGGAGCTAATGCTTGAGACTTTGCAGCAGGTGGGCA
AGGAACTTCCCCGTGCTGAACCCCTGCTGGGAGGAGCTGCTGGAGCTGCC
GATGACTCCGAACTGCAGAGCTTGGAGCCGGAAAGTCGTAAGACTGAAGC
CACCCAGGATGCCGAGGAGCACCCCGACAAGGACAACTCCTACTCCGACA
GCGATGAGACCGATGAGCTGCAGAAGTTCCCCGGCAAGATGCCACTCGAG
CTGGACTTGAGTGACCTGGCTGCCGCCATTCTGCGCAACAACAAGAAATC
CCGCATGAACTGTGTGGTGGAGCGCAAGCACGCCGAGGAGATTGTCGACT
CGCCCTCGAAGACGGTAGCCCTGCCCTTCGGAGTCAACCTGACCACGGAT
CCCAAGAAGGCACGCATCACCGGCGAGCGGATCTCGATCTTCTGCGACGG
CGGCGACGACAAGGATAAGGAGGAGAAGGAGGCCAAGCGCCAGCGGGAGC
AGGAGGAGGAGGACTCCGATGAGGATGCCGAGCCGCTGAGGCCCATGTTC
ATTCCCTTCCAGCGAGTGCCCATTCCCTTCGGACGCATTCCCGACCAGAT
GCCGCTGACCCATATGCCCCAGAGGATGATGCCCCCAGCCATGCAGATGC
AACAGCAATTGCCCCAGCAGCAACCGCAGGGACTCATCATCATCGGCAGC
TGCACCTCAGTTCACGACCTGCCATGCGTTCCTCCCATGCGGCACAGGTG
TTGCGGGGC
FMO06916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RB | 2695 | CG10596-RB | 207..1206 | 9..1004 | 4720 | 98.5 | Plus |
| Msr-110-RD | 2686 | CG10596-RD | 207..1197 | 9..1004 | 4575 | 97.6 | Plus |
| Msr-110-RC | 2600 | CG10596-RC | 207..1111 | 104..1004 | 4245 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5568600..5568996 | 944..548 | 1940 | 99.2 | Minus |
| 3L | 28110227 | 3L | 5569117..5569363 | 547..301 | 1235 | 100 | Minus |
| 3L | 28110227 | 3L | 5573631..5573830 | 303..104 | 1000 | 100 | Minus |
| 3L | 28110227 | 3L | 5576837..5576933 | 105..9 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:45 has no hits.
FMO06916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:01 Download gff for
FMO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..1163 | 9..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:22:43 Download gff for
FMO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..1163 | 9..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:37 Download gff for
FMO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..1163 | 9..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:37 Download gff for
FMO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5568579..5568996 | 548..963 | 98 | <- | Minus |
| 3L | 5569117..5569361 | 303..547 | 100 | <- | Minus |
| 3L | 5573632..5573829 | 105..302 | 100 | <- | Minus |
| 3L | 5576838..5576933 | 9..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:01 Download gff for
FMO06916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5561679..5562096 | 548..963 | 98 | <- | Minus |
| arm_3L | 5562217..5562461 | 303..547 | 100 | <- | Minus |
| arm_3L | 5566732..5566929 | 105..302 | 100 | <- | Minus |
| arm_3L | 5569938..5570033 | 9..104 | 100 | | Minus |
