FMO06917.5prime Sequence
1143 bp (967 high quality bases) assembled on 2008-10-01
> FMO06917.5prime
CAGTCGACATGCGAAAGAATACCATTTGGAACTACTCTTTAATATTCTTC
TGCTGTGTGCTGAAGAGCATAAGTACGCTAGATCATGGCCCGCACACAGT
ATCAGTCGATTCGAATCGACACAACACACAGCATCAGTATAAGCAAAATC
CCAATGTTGCCTCACAACGTCACTCATCCCACGAATCTGGTCAGAGTTTA
CACAATTCGCAATCGGAACATGTCACCCATATTGCCGCATCGCACGCCGG
AAGCGGCGGAGAGCACTCCACTCATTTGGCGCAAAATCTGCACAGGAGCT
CATATAATCTTCTGAGCGAGGCCATGTCCCAGGCTGTCAGCAATGAATTT
AGTTCCATGGGAAGTGGTTCAGCGGATGGAGCGTGTGCTGCTGATGATTT
TGATTGCTACAGTGGAAGTGTTCAGGATCGCTTTGGCATGGAGGCTATTG
CCAGCTTGCATCGTCAGCTAGATGATGACGATAATGGAAACATCGATCTG
AGCGAGTCCGATGACTTTTTGCGGGAGGAATTGAAGTACGACTCGGGCTA
CGAAAAGCGGCAGAAAGCGTTTCACTTCAATGACGATATGCATATATCGG
TCAAAGAACTTTGGGAGGCCTGGCTCAGATCGGAGGTGCATAATTGGACC
ATCGAGCAGACCACCGATTGGCTGGCTCAGTCCGTTCAGCTGCCGCAATA
CGTTGATCTGTTCAAATTACACAAGGTTACTGGCGCTGCCTTGCCAAGAT
TGGCTGTGAATAATCTTCAGTATGTTGGCAATGTACTTGGCATCAAGACC
TATACACAAACCAAAAATCTCATTGAAGGCAATGGATGTGGTTCTGTTTG
GGCCACCGCGAGAACTGGTACCCGCTGGAAAGACTACATAATGGTAACAC
TGTTGCTAATGTAATTATTGGTTGGTTGGTACGCCTTATCACCAAATAAG
AATGCCAAACGGCATCTGCGTCAAATGACCAAGATATGAAGGGATTGTAA
CGGCTGAACTAGTCTCTGAGAATGCTAAAGGACTAACGGGCCGAATGGAG
CAGGAAATGTGGGCAACGAAAAACTAGATTGGGACCGTCCGTTAAAAACG
CCCCACCTCCTATTACATGAACTCGAATTGGAAGATTCGACCA
FMO06917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stim-RD | 2141 | CG9126-RD | 193..1285 | 9..1089 | 4710 | 96.4 | Plus |
| Stim-RA | 2255 | CG9126-RA | 193..1285 | 9..1089 | 4710 | 96.4 | Plus |
| Stim-RF | 2319 | CG9126-RF | 600..1349 | 352..1089 | 2995 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15938756..15939100 | 353..9 | 1725 | 100 | Minus |
| X | 23542271 | X | 15936792..15937031 | 755..516 | 1170 | 99.2 | Minus |
| X | 23542271 | X | 15937591..15937754 | 515..352 | 820 | 100 | Minus |
| X | 23542271 | X | 15936319..15936436 | 862..747 | 480 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:04 has no hits.
FMO06917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:14 Download gff for
FMO06917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RA | 186..1159 | 1..972 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:22:32 Download gff for
FMO06917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RA | 170..1143 | 1..972 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:00 Download gff for
FMO06917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stim-RA | 186..1159 | 1..972 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:00 Download gff for
FMO06917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15936138..15936248 | 863..972 | 91 | <- | Minus |
| X | 15936319..15936434 | 749..862 | 97 | <- | Minus |
| X | 15936799..15937031 | 516..748 | 100 | <- | Minus |
| X | 15937591..15937754 | 352..515 | 100 | <- | Minus |
| X | 15938758..15939107 | 1..351 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:14 Download gff for
FMO06917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15830171..15830281 | 863..972 | 91 | <- | Minus |
| arm_X | 15830352..15830467 | 749..862 | 97 | <- | Minus |
| arm_X | 15830832..15831064 | 516..748 | 100 | <- | Minus |
| arm_X | 15831624..15831787 | 352..515 | 100 | <- | Minus |
| arm_X | 15832791..15833140 | 1..351 | 98 | | Minus |
