FMO06918.5prime Sequence
1179 bp (1021 high quality bases) assembled on 2008-10-01
> FMO06918.5prime
CAGTCGACATGTCCACGATTACCAGAAGCGCTAGCGCAAGTCCTATGGCG
CTGAACGGCGTCATCGATGCCAGCCTGTTCCCCCTAAAGTCCACGGCCGA
TGTTATCAATCTGTTCCGTCGCGCTCTAACCTCTGGAATCGAGCCTGATC
TCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTTTGACGACG
GGAGAGGCTGCTGCGCAGGCCGCTCAAGCCGCCGCGGCCGCAGTCGCAGC
AGGTGACATTAGTCAGGCGACGACAGGTGGAAATGACATCATCATGGGCA
ACAGCGTCCCGTTTCCAGTTGTTACCCACGAACTGATCGCCGGGCTGTAT
AAGAAGTTCCAGACGATCCTGTCGGTGGTCGAGAAGCCCAAGCCCCACCG
CCAAGCCACCCGCGAGGTGATCAAGAAGGTGTCGGATGTGATCTGGAACT
CGCTGATCCGCAGCAGCTACAAGGATCGGGCTCACTTGCAAAACCTCTAC
AGCTATCTGTCCGGCAACAAGTTGGACTGCTTCGGCGTTGCTCTGGCTGT
GGTGGCGGGTTGCCAGTTGCTTGGCTACAAGGACGTGCGACTGGCCATCT
CCGAGGATCATGCCTGGGTGGTATTTGGCCAAAAGCGCGTGGAAACAATC
GAAGTGACATGGCACGGCAAAAGGAAGCGAGGATAAGCGGGGGCAGGATA
TTCGTCCCGGGATCGAATCCGGATCCTGGCTCTACTTGGGTGGCCTGGCG
GTGGTTTGCGAGCGTGGCATGGAAGTGGCGGGCATCTGTGCCGCTCTGAA
TATTTCATTGACCTCGAACAGTGACTGCGTGGAGGTGGCAAGAGCTTCAA
CAGCAGTTGCTGTGGCTACTCTACGATTTGGGCAACCTCAAACGCTATCC
GATGGGCCCTGGGCCACCCTAGGCGAGCTGGAGGAGATTCATCGCACGCA
TCCCAGCATCAGTTGCGAGCAGTTATATCTGCGAGCCTATAGAAGTCGGC
GAGGACCACTATCGGAACCATCACGTTATATCCGTATCCCTACCAGGGAA
CTACTTACATCGATTGCTCAAATACGCGACGCCTTTGCCGCATGGCAAAT
GTCGGCGGACGTTATCGTTTTGTAATAGTATCTGTCATGAATGAACAAAG
AAAATCTACAGGACTATTGACACTGGCCA
FMO06918.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mnn1-RA | 4275 | CG13778-RA | 1039..2148 | 8..1120 | 5160 | 98.3 | Plus |
| Mnn1-RB | 1927 | CG13778-RB | 295..1404 | 8..1120 | 5160 | 98.3 | Plus |
| Mnn1-RC | 5196 | CG13778-RC | 1039..2148 | 8..1120 | 5160 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7057861..7058327 | 274..741 | 2290 | 99.8 | Plus |
| 2L | 23513712 | 2L | 7057406..7057677 | 8..279 | 1360 | 100 | Plus |
| 2L | 23513712 | 2L | 7058392..7058765 | 739..1115 | 1270 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:26 has no hits.
FMO06918.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:53 Download gff for
FMO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mnn1-RC | 1032..2162 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:22:28 Download gff for
FMO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mnn1-RA | 1005..2135 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:31 Download gff for
FMO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mnn1-RC | 1032..2162 | 1..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:31 Download gff for
FMO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7057399..7057674 | 1..276 | 98 | -> | Plus |
| 2L | 7057864..7058325 | 277..739 | 99 | -> | Plus |
| 2L | 7058393..7058785 | 740..1135 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:53 Download gff for
FMO06918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7057399..7057674 | 1..276 | 98 | -> | Plus |
| arm_2L | 7057864..7058325 | 277..739 | 99 | -> | Plus |
| arm_2L | 7058393..7058785 | 740..1135 | 94 | | Plus |
