FMO06921.5prime Sequence
1004 bp (930 high quality bases) assembled on 2008-10-01
> FMO06921.5prime
CAGTCGACATGTCATGCCGCGCCCCCTTCCAGCCCGACGATCAGTATGAG
CAGCTGCGCCGGCCGAATGTCGGCGGAGCAGGCGGAGTGGCCATGCCGGG
ACTGGATCAGCAGGCGCATCTCTTTGGGGAGTACGCCGGAGCGCAGGCGT
ACGGTCAGGTGGTTGGCAATTTTCCTGTGCAGGCCATGCAACCCCAGGCG
CAGACTCTGTCCGATGCGTCCAATCTGTCGGCCACGGCCACAATTTTCAT
CCCTCGAGGAGCTGCTCCCCCGCAGCAGCAGTCGCGACATCAGCAATACC
AGCAGGCTGGTGGAGCCGGTGGAGGAGCTCCTTATGGCCAACAGCAGCCG
CGCTATGTGAATGGTTTTAAGCATCACCATCAGCAGCACCACCAGCAGCC
GCACTACAACCATCATCACAATCATCAGCAGAAGTTCAACAACGATATGC
AGAAGCTAACGAATTCCGTGCAGAATCGCCTGCACCTGAATAGCCAGCAG
GGCTCAGCCGGCAACTACTATCAGCAGCAGCAGGTACACCAAAACACACA
CCACCACCAACAACACCAGCAGCAGCATCAGCCACACAACCAACACGCCA
AGTTTCAACGGCACTTCCACTTGAATAACTCATTCCAAACAAATCGTACA
GCAAACACAGCACAACCAGCCCGCAGCAGCCGCACCACCAGCAGCACAAC
CAACAGCAGCAGCAGTATATTCAGAACCAGAATCAACAACCCGCAGCCAT
CCACTTCGACTGCGGCGGCCCTCCTTCGTCGTCCTCGAACTCTTCGCAGC
CGGACATGGCCACCATAGCACTGGAGTATCTTGAATACAGTCATACTTTG
CCTTAACAGAATCCGGGCCATTTGATTTCAATTGCATCACGCTTCCTGAC
CATTTTCGATGGCAAGGAAGACCACCAATTCGTGCTCCTCATCCGCCTGG
AGGACATCTTCAAAAGTCAACGAACAGCGAACTTTCCGGAAACGGGCGCC
AAGC
FMO06921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8963-RC | 2550 | CG8963-RC | 251..1244 | 9..1004 | 4420 | 97.1 | Plus |
| CG8963-RB | 2753 | CG8963-RB | 334..1327 | 9..1004 | 4420 | 97.1 | Plus |
| CG8963-RA | 2522 | CG8963-RA | 223..1216 | 9..1004 | 4420 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17018066..17018908 | 857..9 | 3935 | 98.9 | Minus |
| 2R | 25286936 | 2R | 17017698..17017802 | 961..857 | 315 | 86.7 | Minus |
Blast to na_te.dros performed 2014-11-28 22:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2687 | 378..762 | 411 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2265..2829 | 188..747 | 355 | 57 | Plus |
FMO06921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:10 Download gff for
FMO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RA | 216..1189 | 1..978 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:34 Download gff for
FMO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RB | 333..1306 | 1..978 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:26 Download gff for
FMO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RA | 216..1189 | 1..978 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:26 Download gff for
FMO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17018063..17018912 | 1..859 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:10 Download gff for
FMO06921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12905568..12906417 | 1..859 | 98 | | Minus |
