FMO06923.5prime Sequence
1047 bp (960 high quality bases) assembled on 2008-10-01
> FMO06923.5prime
CAGTCGACATGGATGCGAGCTTAGAGGAGAGCATGGATAGCGATGGCGCC
AGTTCGCCGATTACCAAGACGGAGGCAACGGAATCTCCGCCAGAAGCGGG
TCTCAATGGAAACGGCAGTGGTAGTGGTAGTACCAGCCAGGAGACCCCAA
ATTATGGCGTTGCTATACTCAAGGAAAAACCCAGCGAGGCCCATAGGAGC
AAGCCCTTCAATGCGTTTAGTGGTCGTCCCATCGGGGAGCACACCGCCCA
GCAGCAGGCGCTGCAGCAACAACAACTGCAGCAACAACAACAGCCACAGC
AGCCGCAGCAACAAGCTCCTTCCGGAGCAAATGGAGTCACAGGACCCCCG
GAAATCTGGGTGGAAACCAAGGCGGAGGACGGTCGCTCATATTATTACCA
TGCGGTAACTAGGGAAACCACTTGGTCTCGACCCGATGGCCCCGCTGTCA
AGATAATGACCCAGGCAGAGGTGGAGGAGATGGCCAAGCGACCTGCCCAG
GCCGCGAAAACGGAAGCCAAGGCAGGCGAGACGTCGGTCGAGATTCCGCC
AGTGTCGTCACATCTTACCTCACAACCTCCGCCGCACCTGATGAGCCAGC
CACCACCCAATGCGGCAGCACCGCTGCTTTCCCAGCCACCACCCAATGTA
CGGCAACAGCCACCACCAAATGTTCCAGCCACCTGGAATGCAGGCGCCTC
CTGGGTTCGGACAGCCGCCGTTTTGTATGCCACCTCCAACTTACGGATTT
CCTGGAGGACCGGCACCAGCTGGGGCACCTTGGGGCGTGGGCATTTCCGC
CTTGGCAGCACAGCAGCACATGCAAGACAAGCCAGCCAAGTCGCTAAATC
ATTAAGCCGGGTTGTTATCGATCCCGGCGGTTATAGCGCGAGCAGCAGAG
TGGTCACAGCATCGTGCTCCCGATGGAAGACCGTTACTATTTCCACGCCG
GTCGAGAGAGAGAGTGGTCTGGGAGAAACGCAAGGCGCTGAGGACATGGA
GGCCGCTCGCAATGCTTGCCCACTCGGCGTTGGACCCGCTAGTGGGC
FMO06923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42724-RK | 3589 | CG42724-RK | 104..1130 | 8..1040 | 4760 | 98.2 | Plus |
| CG42724-RI | 4036 | CG42724-RI | 104..1130 | 8..1040 | 4760 | 98.2 | Plus |
| CG42724-RG | 2805 | CG42724-RG | 104..1130 | 8..1040 | 4760 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6367023..6367833 | 1011..195 | 3535 | 98.3 | Minus |
| 3R | 32079331 | 3R | 6367897..6368086 | 197..8 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:51 has no hits.
FMO06923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:12 Download gff for
FMO06923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RG | 98..1122 | 1..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:28 Download gff for
FMO06923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33097-RB | 197..1221 | 1..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:32 Download gff for
FMO06923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RG | 98..1122 | 1..1032 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:32 Download gff for
FMO06923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6367002..6367831 | 197..1032 | 97 | <- | Minus |
| 3R | 6367898..6368090 | 1..196 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:12 Download gff for
FMO06923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2192724..2193553 | 197..1032 | 97 | <- | Minus |
| arm_3R | 2193620..2193812 | 1..196 | 97 | | Minus |
