FMO06929.5prime Sequence
1142 bp (1018 high quality bases) assembled on 2008-10-01
> FMO06929.5prime
CAGTCGACATGTTACCTGCCCGTGGTCTCCTTATCGGATCATGCTGCCTA
CTGGCTCTACTGATTCATCCTGTGCAGCCGAATCCCATTGCACCCCGGGC
GGAAGTTGCCGCCGAGTTCATCATTCTGCACAACAATGACATGCACGCCC
GATTCGAGCAGACGAGTGTGACCAGTGGCACCTGCTCCAAGGAGGAGGCC
AATACGGATCAGTGCTACGGAGGATTCGCCAGGGTGGCATACGAGGTGCG
AAAGTATCGCAAGGAGGCGGAGGAGGGTGGAACTCCAGTGTTTTATCTCA
ATGCAGGTGACACCTATACCGGAACTGCTTGGTTCACCGTCTATAAGGAC
AAGATCGCCAGTGCTTTCCTCAACAAGCTATCGCCAGATGCTATTTCTCT
GGGCAACCATGAGTTTGATCAGAATGTTGAGGGTTTGGTGCCCTTCCTAA
ATGCCGTGGAATTCCCTGTTTTGGCCTGTAATCTGAACCTCACCGATGTT
CCGGAAATGGCGGCTGCCAAGCAGCTGGCCAACTCGACGATCCTCGAGAG
AAATGGGGTGAAGGTTGGCGTTATCGGTTACCTTACGCCCGATACCAAGG
TGCTTGCCTTTCGGAACAAAGTGGAGTACGAGGAGGAAATCGTGTCCATC
AATGCGGAGGCCGCAAAGCTAAAGGCTCAAGGCATCAATATCATCATCGC
TTTGGGTCACTCTGGATACCAAAAGGATCAGGAGATAGCCATGAACTGCC
CGGAGGTGGACATAGTCATTGGTGGCCATTCGCACACATTCTTAGATGCC
AATCAGCCGGTGGCCGATCCCACGGACTCTGATCCGGAGGCGGTTCGAGG
TCCCTATCCCACCACAGTGTGCAGGCGAGCGGCAAGAAGTACCAGTGGTT
TCAGGCATACCCGTATACCAAGTATCTCGGAAAGATCATGTTCAGTTTGA
TGCCAAGGAAATCTGATGAGTTTGATGCGCTCCCATTTTGCTGAATGCCT
CTGAACTCAGACAGATCCCTTGAATTGCATAACAAATTACGCTCAAGCTG
ACAACTGAAACACGGTCTGGGTAACACTAAGGTGTTCTCCGAGGGCGCAA
TCTGCCCATTAAGGATCAACATTGATACTTGTTGACATGAGC
FMO06929.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| veil-RB | 2220 | CG4827-RB | 240..1344 | 9..1097 | 4825 | 97 | Plus |
| veil-RA | 2021 | CG4827-RA | 41..1145 | 9..1097 | 4825 | 97 | Plus |
| CG43110-RB | 8272 | CG43110-RB | 4892..5186 | 945..653 | 1365 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17480332..17480588 | 396..652 | 1285 | 100 | Plus |
| 2R | 25286936 | 2R | 17480651..17480935 | 653..936 | 1265 | 98.6 | Plus |
| 2R | 25286936 | 2R | 17479824..17480060 | 9..245 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 17480117..17480267 | 245..395 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 17491751..17491873 | 665..787 | 285 | 82.1 | Plus |
| 2R | 25286936 | 2R | 17491022..17491164 | 103..245 | 280 | 79.7 | Plus |
| 2R | 25286936 | 2R | 17491219..17491346 | 249..376 | 235 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:23 has no hits.
FMO06929.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:57 Download gff for
FMO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 34..1040 | 1..1003 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:23 Download gff for
FMO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4827-RA | 57..1063 | 1..1003 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:48 Download gff for
FMO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 34..1040 | 1..1003 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:48 Download gff for
FMO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17479817..17480059 | 1..244 | 98 | -> | Plus |
| 2R | 17480117..17480267 | 245..395 | 100 | -> | Plus |
| 2R | 17480332..17480588 | 396..652 | 100 | -> | Plus |
| 2R | 17480651..17480945 | 653..945 | 98 | -> | Plus |
| 2R | 17481016..17481076 | 946..1003 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:57 Download gff for
FMO06929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13367322..13367564 | 1..244 | 98 | -> | Plus |
| arm_2R | 13367622..13367772 | 245..395 | 100 | -> | Plus |
| arm_2R | 13367837..13368093 | 396..652 | 100 | -> | Plus |
| arm_2R | 13368156..13368450 | 653..945 | 98 | -> | Plus |
| arm_2R | 13368521..13368581 | 946..1003 | 93 | == | Plus |
