FMO06935.5prime Sequence
552 bp (552 high quality bases) assembled on 2008-10-01
> FMO06935.5prime
CAGTCGACATGTGGTTCGTGAAAATGATTTCAACAGAAGCGAGTTTTCCA
CTTGGCTTCATCCTAACGAGCTTGCTATTGGCATTTCCCGGTTGCCGAGG
AGAGAGAACGAATGTGGGTCTCGTCTATGAGAACACCGATCCGGATCTCG
AGAAGATCTTCCACCTGGCCATCAGCAAGGCGAATGAGGAGAATGAGGAT
CTGCAACTGCACGGCGTGTCCGTCTCCATTGAGCCGGGAAACTCCTTCGA
AACCTCCAAGAAGCTCTGCAAAATGCTAAGGCAAAATCTGGTGGCAGTTT
TCGGACCCACCTCAAATCTGGCCGCCCGTCACGCGATGAGCATCTGCGAC
GCCAAGGAGCTGCCATTTTTGGACACGCGCTGGGATTTTGGGGCCCAACT
GCCGACCATCAATCTGCACCCACATCCAGCCACGCTGGGCGTGGCCCTGC
GGGATATGGTGGTGGCCCTGGGCTGGGAGAGCTTCACCATTATCTACGAG
TCGGGCGAGTACTTGCCCATCATGCGAGAGCTGCTGCAAATGTACGGCAC
CG
FMO06935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5621-RD | 3008 | CG5621-RD | 161..704 | 9..552 | 2645 | 99.1 | Plus |
| CG5621-RC | 3011 | CG5621-RC | 161..704 | 9..552 | 2645 | 99.1 | Plus |
| CG5621-RA | 3640 | CG5621-RA | 161..704 | 9..552 | 2645 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20902687..20902958 | 281..552 | 1285 | 98.2 | Plus |
| 3R | 32079331 | 3R | 20902424..20902588 | 117..281 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 20902116..20902226 | 9..119 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:24 has no hits.
FMO06935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:01 Download gff for
FMO06935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5621-RA | 156..704 | 1..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:57 Download gff for
FMO06935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5621-RA | 118..666 | 1..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:38 Download gff for
FMO06935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5621-RA | 156..704 | 1..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:38 Download gff for
FMO06935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20902425..20902588 | 118..281 | 100 | -> | Plus |
| 3R | 20902688..20902958 | 282..552 | 98 | | Plus |
| 3R | 20902111..20902224 | 1..117 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:01 Download gff for
FMO06935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16728410..16728680 | 282..552 | 98 | | Plus |
| arm_3R | 16727833..16727946 | 1..117 | 96 | -> | Plus |
| arm_3R | 16728147..16728310 | 118..281 | 100 | -> | Plus |
