FMO06936.5prime Sequence
1041 bp (981 high quality bases) assembled on 2008-10-01
> FMO06936.5prime
CAGTCGACATGTGGATATCCATGAACCTGTGGGGAATAGCTCGATTGCAG
TGTTTTCTAAAGACGCCTCAGGCTGCGTTGGAAAAGAGTACAAGCAAATC
GTTCGAAGAGGACCTGGACACGCCCTCGTACGACTATCAGAATATGTCCA
TGCTTCGTTCCAGTGTGCTCCGCATCTGGATGCAGCTGTGGCGTGGTGAC
AGTGAACTCCTGCCGCGCTCAGCCAATCTGGTACAGGTGCTGGGGTCCAT
TTCGGCGCTGTGCTGCGTGGACAAGAAAGGTATCCTGTCGTGGCCCAATC
CCACCGCCGAAAAGGTATTCTTCCTGCACAACACAGACGAGGAGGCTCGC
GAGGATGGAGCAGGCAGTCAGTCTTCTTCACAGAGCGAGAGCGACGACGT
ACCGGTTGTGGATGAGGACCACAAGGAGCGCGGAATAGTGGCTGAAGTGC
TGGACCTCACGCACGACCAACACTGCCCCTTTCGGCTGGAGTTCGACGAT
CACGAATGGAAGGCGCACATCAAGTCCTTGAAGCCACTGGGTCTTGCCAT
TCTGCTAAACACCTGTTCTCCACTCACCCACGAGCACTACGCACAGTTCT
GCGGTCATGTAACCGCGGTGGCTATGCTCGACAAAGATCTGGTACCTGTG
ACTAATCGGTATGCGTATGCACTCATTGAGTCCAGTAAAAGCTTTTTGCA
TGGACGCTGCCTTTGCGAACTGGCCAAACAGATTGGATTCACCGACCATG
CCACTGATCGGTTCGCGCTGGAGGGTCAATTGGGCTAGCTATCGCCACTT
GCAACCTGATGTTGTGCGAAGGGACATTCGTTTCGCCCGGCAGCTCCAGC
TGTCCTCCAAGGTGAAGTCCCATTCCTGCACTCTTTGTCTGTGTCATGCG
CGAGAATCCAGGCTGCTATTTGAGACTTTTCACCCAGGGAACAGCAGACA
TTATTCTGGACTGCTGCGATGACTTTTGAACGCATGAATCTGCAACATTG
TCGCAACGGAATCGCAAGCGTGCACTGGAACTTTTATCGCG
FMO06936.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k05819-RA | 4864 | CG3054-RA | 1111..2144 | 8..1038 | 4780 | 98 | Plus |
| l(2)k05819-RD | 5201 | CG3054-RD | 1111..1761 | 8..658 | 3255 | 100 | Plus |
| l(2)k05819-RC | 4819 | CG3054-RC | 1111..1761 | 8..658 | 3255 | 100 | Plus |
| l(2)k05819-RD | 5201 | CG3054-RD | 1761..2099 | 703..1038 | 1305 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4395418..4395952 | 8..542 | 2675 | 100 | Plus |
| 2L | 23513712 | 2L | 4396009..4396172 | 540..703 | 820 | 100 | Plus |
| 2L | 23513712 | 2L | 4396968..4397201 | 801..1029 | 715 | 91 | Plus |
| 2L | 23513712 | 2L | 4396809..4396906 | 703..801 | 445 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:32 has no hits.
FMO06936.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:18 Download gff for
FMO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RA | 1106..2148 | 1..1041 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:55 Download gff for
FMO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RB | 114..1156 | 1..1041 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:13 Download gff for
FMO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RA | 1106..2148 | 1..1041 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:13 Download gff for
FMO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4395413..4395950 | 1..540 | 99 | -> | Plus |
| 2L | 4396010..4396172 | 541..703 | 100 | -> | Plus |
| 2L | 4396810..4396906 | 704..801 | 98 | -> | Plus |
| 2L | 4396969..4397213 | 802..1041 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:18 Download gff for
FMO06936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4395413..4395950 | 1..540 | 99 | -> | Plus |
| arm_2L | 4396010..4396172 | 541..703 | 100 | -> | Plus |
| arm_2L | 4396810..4396906 | 704..801 | 98 | -> | Plus |
| arm_2L | 4396969..4397213 | 802..1041 | 91 | | Plus |
