FMO06937.5prime Sequence
999 bp (911 high quality bases) assembled on 2008-10-01
> FMO06937.5prime
CAGTCGACATGAATAGCCTGGCGCGGGTTTTCAGCAACTTCCGCGACTTC
TACAACGACATCAATGCCGCCACCCTCACGGGAGCCATCGATGTGATCGT
GGTGGAGCAGCGCGATGGCGAGTTCCAGTGCTCGCCCTTCCACGTCCGGT
TCGGCAAACTGGGAGTGCTCAGGAGTCGGGAGAAGGTGGTGGACATTGAG
ATCAATGGCGTACCGGTCGACATACAGATGAAGCTGGGCGATTCTGGCGA
GGCCTTCTTTGTGGAGGAGTGCCTGGAGGATGAGGACGAGGAGCTGCCAG
CCAACCTGGCCACCTCGCCCATACCCAACAGCTTCTTGGCGTCTCGGGAC
AAGGCCAACGACACCATGGAGGACATCAGTGGAGTGGTGACAGATAAAAA
CGCTAGCGAGGAGCTGCTTCTGCCACTGCCATTGCCGCGGCGCAACTCCA
TTGACTTCTCCAAGGAGGAGCCCAAGGAAGCCGTTGTTGAGGGCAGCAAG
TTCGAGAATCAAGTCTCGGACTACACGCAGCGCAGGCACACCGACAACAC
ACTGGAGCGTCGCAACCTAAGCGAAAAGCTCAAGGAGTTCACCACGCAGA
AGATCCGGCAGGAGTGGGCCGAGCACGAAGAGCTGTTTCAGAGCGAGAAG
AAGCCGGCGGACTCGGACTCGCTGGACAACCAAAGCAAAGCTTCAAACGA
AGCTGAGACGGAGAAGGCAATTCCGGCGGTCATTGAAGACACGGAAAAAG
AAAAGGATCAGATCAACCAGACGTTAACCTCACCAGGTCACAACCAGCGA
AGCCACCAAGGGAGGTGTCCAAGGAGCAAAACCAAAAACCGGCGCAAGAA
GTCGCAAATGAGAAAATTGCCAGCGCAAGAACTCTTCAAGCAGCTCATTG
GGCAGCGCCGCGTGGGATTTGCCTTCCGCGGAAACCCATCCCTGGAGGAG
AACTCGATGGAAGAGAATGCCCTCATATTCTGTGCACAACAATAACACA
FMO06937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpin-RE | 3867 | CG8709-RE | 483..1482 | 9..997 | 4365 | 96.8 | Plus |
| Lpin-RL | 3959 | CG8709-RL | 480..1479 | 9..997 | 4365 | 96.8 | Plus |
| Lpin-RB | 4088 | CG8709-RB | 480..1479 | 9..997 | 4365 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8141444..8141823 | 910..533 | 1540 | 96.6 | Minus |
| 2R | 25286936 | 2R | 8142099..8142308 | 397..188 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 8142641..8142822 | 190..9 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 8141886..8142028 | 540..398 | 700 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:34 has no hits.
FMO06937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:55 Download gff for
FMO06937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpin-RB | 480..1402 | 9..926 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:13 Download gff for
FMO06937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8709-RB | 476..1398 | 9..926 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:58 Download gff for
FMO06937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpin-RB | 480..1402 | 9..926 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:58 Download gff for
FMO06937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8141891..8142028 | 398..535 | 100 | <- | Minus |
| 2R | 8142099..8142307 | 189..397 | 100 | <- | Minus |
| 2R | 8142643..8142822 | 9..188 | 100 | | Minus |
| 2R | 8141421..8141820 | 536..930 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:55 Download gff for
FMO06937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4028926..4029325 | 536..930 | 96 | <- | Minus |
| arm_2R | 4029396..4029533 | 398..535 | 100 | <- | Minus |
| arm_2R | 4029604..4029812 | 189..397 | 100 | <- | Minus |
| arm_2R | 4030148..4030327 | 9..188 | 100 | | Minus |
