FMO06938.5prime Sequence
840 bp (840 high quality bases) assembled on 2008-10-01
> FMO06938.5prime
CAGTCGACATGGACACCGGAAGTGTGGTTAGTGAACCGATTTCCGCGCAT
CATCGCGCCTTCGCCAAACAGAAGTCCGCCTCCATGACCATTCTCAATCC
GAAGGGTTGTGGCAGTGCCGTCAAGTACAGTCTGCACTCGACTGCAGAGA
CGAACCAGGAGACTGCCAGTACCACGACCACCTCTACCCATTGTTCCACA
ACTGGAAGAAGGCGCAAGGGTGGCTCCCTGGGCGGTACTCTCTCCTCGCG
ATCGACGCGCAGCGAATCCAAGGAATTGCGATCGGCTCTTCAGGATCGGG
AGGCTGTCATCCAGAATCTGCGTATACAGCTTTGTCTGGGCAAACTGCCA
CGTCCCACGGGACCACCGCTGGATGAGTCCGAGAAGCCGGCGGCTGAGCA
AAAACTAAACAGACTGAAGACGGAGGCGGAGAATAAGCGAATTAAGATCA
AGAACCTGAAGAGTGCCCTGGAGAAGCTGGACATCACAGACAACATAGAC
ATCCGCATCCGTCAAGCCGAATTGGAATACGCACTCGGCAGAGAAGAACT
CCAGATGCTCTCGATTGTGGAGGAGGCTCGCGCCTTGCAGGCACGTCTGG
AAAAGTCCAAGCCCGAGGCGCAGACCCTCTACAACATCATCAGCTCTGGA
GTCTCCCTGAGTCTGCACGCCGTGCATGCCACCTCGGGAAGATGGGCAGT
TCAACAGAGGACAGACCAGCCGGTTTCTACGTAGAATGGGCTTTAGAGGG
TGATGGCTTGTACTAGGGCGATCGCATTTTGGAGATCAACGGACGACTGG
GAACCGGAAATCCAAGGAAGACTTGCAAAAGCCAATAAGG
FMO06938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sprt-RA | 2795 | CG30023-RA | 573..1398 | 9..832 | 4005 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11386663..11387067 | 490..86 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 11386253..11386596 | 832..491 | 1545 | 98 | Minus |
| 2R | 25286936 | 2R | 11391071..11391148 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:35 has no hits.
FMO06938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:57 Download gff for
FMO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 567..1400 | 4..835 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:36 Download gff for
FMO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 565..1398 | 4..835 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:39 Download gff for
FMO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 567..1400 | 4..835 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:39 Download gff for
FMO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11386255..11386596 | 491..831 | 97 | <- | Minus |
| 2R | 11386663..11387066 | 87..490 | 100 | <- | Minus |
| 2R | 11391071..11391154 | 4..86 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:57 Download gff for
FMO06938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7273760..7274101 | 491..831 | 97 | <- | Minus |
| arm_2R | 7274168..7274571 | 87..490 | 100 | <- | Minus |
| arm_2R | 7278576..7278659 | 4..86 | 96 | | Minus |
