FMO06939.5prime Sequence
800 bp (797 high quality bases) assembled on 2008-10-01
> FMO06939.5prime
CAGTCGACATGGAGGTATCCGCCGATCCGTACGAGCAGAAGCTCTACCAA
ATGTTCCGCAGCTGCGAGACGCAGTGTGGACTTCTGGACGAGAAGTCCCT
GCTGAAGCTCTGCTCACTGCTGGAGCTCCGGGATCAGGGATCCGCACTGA
TCGCCAGCCTGGGCGGCAGCCATCAGCTGGGCGTGTCCTTTGGCCAGTTC
AAGGAGGCGCTACTCAACTTCCTGGGCTCCGAGTTCGATGGTAATACGTC
ATCGGGTTTCATTGAGCGTTCACTGGTGATTACGGATGAGCCGCTAAACA
ACACATACATCGAGAGTCCGCCGGAGTCTTCCGATCGCGAGGTTTCACCC
AAACTCGTCGTGGGCACCAAGAAATACGGTCGCCGGTCTAGGCCACAGCA
GGGAATCTACGAGTTATCCGTCACGGACTCGGACAATACGGACGAGGACC
AGTTGCAGCAGCAGCAAAATCAGCGAAGCCTCAACGGATGCGATGAGCTG
GGAGTTCAGGTGCAACGTTCCTCGTCCCAGAGCGATCTTCCTGGCAGCCG
GCGTCTGCGGTCCGTCCACACCAGCGGGAGCAAACTGAAGCGTTGTGCTT
CACTGCCAGCACGCCGGAAGATGAACAGCAACACCACGGGAGCCACTACA
TCACCGACGGCAGCGGCCAAGTTGAAACAGCTTTCCATCCCAGAGCCGGC
GCAGCACAGCAGCAGCGTGGAATCACTGGACACCGTGACGCCGCAGCAAT
TGGAGACGATCTTAGTGCATAACATTATGGAAGCCTGGGAGCTGGCCAGC
FMO06939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg25D-RE | 4549 | CG14025-RE | 360..1151 | 9..800 | 3885 | 99.5 | Plus |
| Bsg25D-RB | 4585 | CG14025-RB | 360..1151 | 9..800 | 3885 | 99.5 | Plus |
| Bsg25D-RG | 4666 | CG14025-RG | 360..1080 | 9..729 | 3560 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5277934..5278189 | 264..9 | 1280 | 100 | Minus |
| 2L | 23513712 | 2L | 5276933..5277181 | 512..264 | 1245 | 100 | Minus |
| 2L | 23513712 | 2L | 5276512..5276734 | 729..507 | 1025 | 97.3 | Minus |
| 2L | 23513712 | 2L | 5275710..5275781 | 800..729 | 330 | 97.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:01 has no hits.
FMO06939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:50 Download gff for
FMO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 360..1151 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:34 Download gff for
FMO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 370..1161 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:40 Download gff for
FMO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg25D-RB | 360..1151 | 9..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:40 Download gff for
FMO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5276936..5277180 | 265..509 | 100 | <- | Minus |
| 2L | 5277934..5278189 | 9..264 | 100 | | Minus |
| 2L | 5276512..5276731 | 510..729 | 99 | <- | Minus |
| 2L | 5275710..5275780 | 730..800 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:50 Download gff for
FMO06939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5275710..5275780 | 730..800 | 97 | <- | Minus |
| arm_2L | 5277934..5278189 | 9..264 | 100 | | Minus |
| arm_2L | 5276512..5276731 | 510..729 | 99 | <- | Minus |
| arm_2L | 5276936..5277180 | 265..509 | 100 | <- | Minus |
