FMO06940.5prime Sequence
877 bp (871 high quality bases) assembled on 2008-10-01
> FMO06940.5prime
CAGTCGACATGCTGAACTCGAATGCCACCGGCGGCAACAATCATGGGGGC
AGCAGCCGTCGGCCCTTTACCCGCAATTCTTCATCGGTCCGCTCGCAACG
CGGCGGTGGTGGCGGGCTGGGCGGTCGCATGGTATACTCGCCACACACAC
ATCCGCACGTCCAGCAGCAGCAACAACAACAACAGCAGCAACAGCAACAG
GGGCAGCAGCGGTCCAGCAATAACGGCAACAACAACCTGTGGCTGGGCAA
CAGTCCGTGGTGCAACGTCAATTTAAACGGTGGCAACAGCGGCAACAACA
ATAACAACGGTGGCAACAACAACAATAACAACGGTGGCAACATCAGCAGC
AACAACAACAGCAACAATGTCAATAACAAAGATGCAAACCCAAATTGCCA
CAGCCAAGGTCAGGGACCCGGAAATTCCCCCAATCTTGGCCACAATCACC
AACGTGGCTACAACAACGGGAATAACAATCGGGGTATCGGGAACGGGATC
GTAAATGGTAATACCAATGGACCACCCGATTATATGAACTACCGACGTGG
CGTGTGTCCGGCTCAATCGCGGGACTATTCCGGCAACGGAAATGGAAATA
ACAACGGACATGGCCACAATGGACGTCGGTATATGTCCGATAACTTGAAC
AACCCGTCCTCATCCATGAATGGCCTGATCAATTCCGGACACCACCAGCG
CAACTACAACGACAGGAACTTGAATAACCACTTTGGAAACTCCGAACAGA
ACGGAGGACCCGACCATCGGGATCGAGCTGAGGGTTCTTTCGAACTACTT
TATGCGCAACGGATGAGTAGCGGGGCGGTGGCTTACGGACGCCATGGTAT
CGCATTATCAGCAAATGGCCTATTGGT
FMO06940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mura-RB | 3807 | CG9381-RB | 258..1122 | 8..873 | 4125 | 98.7 | Plus |
| mura-RA | 6303 | CG9381-RA | 225..1089 | 8..873 | 4125 | 98.7 | Plus |
| mura-RC | 4671 | CG9381-RC | 1507..1986 | 393..873 | 2185 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9546798..9547187 | 397..8 | 1950 | 100 | Minus |
| 3R | 32079331 | 3R | 9541679..9542014 | 728..393 | 1665 | 99.7 | Minus |
| 3R | 32079331 | 3R | 9541436..9541579 | 873..729 | 400 | 89.7 | Minus |
Blast to na_te.dros performed 2014-11-28 19:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2179..2401 | 141..378 | 274 | 62.8 | Plus |
FMO06940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:23 Download gff for
FMO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RA | 219..1092 | 1..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:09 Download gff for
FMO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RB | 202..1075 | 1..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:49 Download gff for
FMO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RA | 219..1092 | 1..877 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:49 Download gff for
FMO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9541433..9541579 | 729..877 | 92 | <- | Minus |
| 3R | 9541679..9542009 | 398..728 | 100 | <- | Minus |
| 3R | 9546798..9547193 | 1..397 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:23 Download gff for
FMO06940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5367155..5367301 | 729..877 | 92 | <- | Minus |
| arm_3R | 5367401..5367731 | 398..728 | 100 | <- | Minus |
| arm_3R | 5372520..5372915 | 1..397 | 99 | | Minus |
