FMO06941.5prime Sequence
1162 bp (1024 high quality bases) assembled on 2008-10-01
> FMO06941.5prime
CCTATACGAAGTTATCAGTCGACATGGACGCCGACAAGCAGCTGGAAAGG
CAGCTGGAGAAGGAGCTGGACGAGATGCCGGCAGAGGATTTGGACGACGA
TGCGTATGACGAGTATGATCTGATCGTGATACCCGATCAGGGCAAGGGCT
CGCCGCAGCAGGGGCACAGTGAGTCGCCGCAGCAGGAGGAGGAGCACAAG
TCGGAGGAGCTGCGCCAACGATCGCGCCCAACCTGGCCACCGTCGTCCGC
CGGCGGGGATATGACCACCATTGAGTTGATCTCATCGGACGACGAGCCGT
CAGTGGAGGAGACTGAGGGAGGCAATGCCGCTGGCCGTGGCAGAGCGCGC
AATGATTCCAGCAGCAGTAGCGATGATGTGGGCGTGATCGAAGGCTCGGA
ATTGGAATCGAACAGTGAGGTGTCCAGTGACAGTGACAGTGATAGCGACA
ACGCTGGCGGCGGAAATCAGCTAGAGCGCTCGTATCAGGAGCTGAATGCG
TTGCCCAGCAAAAAGTTTGCCCAAATGGTCTCGCTCATTGGAATCGCATT
CAAACTGAATGATCTGGAAAAGATCGAGTCATCGGTGCTGGAGCTGCAAA
ATTTGGCCACTGTGCCGGCTCACGTGTGGCTGAAGTATCTAAAGGCCCGC
CTGGTCGTCACCCAAACGGACGAGGAGCGCAAGGCATTCGAGGAGCAGTG
TGCCAAAGCGTTGGGCTACTACTACAGCATACCGCTGTCCGAATACGTTG
TCAACTACCTGGTGGATCAGGGCAACGTACAGAACCATGTGCTGTGGGCC
AAACTGCTGGCGGACTACGACGTGGAGCGTCCAGACTTTGGCGACAAGCT
GCGTTCGCTGATATCGACAATTACGGACGAAAATGAGGCTGCCGCCTTTG
TGGAAATGCTGCAAAAGCCACTGCGTCACCTGGACGTGCAACGTGAGCAG
CGGCAGATGATCAAGTCCGTTGTGGACAGTTTAAGCACATCTGAACGAGA
CAACGCCGTGTTTGGGATGGTCTGACCAACCAGCTCAGTCTACGATGGGG
GAGAACATTATCCCTGACGATGACCTCAAAACGCTGTGATCCGTTTCATA
TCGACGCTCGTGGCCAGTTCCATTGCCAAGTGGCCTGGTATCTACATGAA
TTCATCAATCCA
FMO06941.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rnp4F-RF | 3116 | CG3312-RF | 82..1184 | 23..1116 | 5060 | 98.1 | Plus |
| Rnp4F-RD | 3146 | CG3312-RD | 112..1214 | 23..1116 | 5060 | 98.1 | Plus |
| Rnp4F-RA | 3323 | CG3312-RA | 289..1391 | 23..1116 | 5060 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5321819..5322331 | 550..38 | 2565 | 100 | Minus |
| X | 23542271 | X | 5321123..5321503 | 1101..727 | 1230 | 93.5 | Minus |
| X | 23542271 | X | 5321561..5321737 | 727..551 | 885 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 532..746 | 324..120 | 116 | 55 | Minus |
FMO06941.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:09 Download gff for
FMO06941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RD | 112..1218 | 23..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:06 Download gff for
FMO06941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RC | 303..1409 | 23..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:25 Download gff for
FMO06941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rnp4F-RA | 289..1395 | 23..1119 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:25 Download gff for
FMO06941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5321101..5321503 | 727..1119 | 94 | <- | Minus |
| X | 5321562..5321737 | 551..726 | 100 | <- | Minus |
| X | 5321819..5322327 | 42..550 | 100 | <- | Minus |
| X | 5322390..5322408 | 23..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:09 Download gff for
FMO06941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5215134..5215536 | 727..1119 | 94 | <- | Minus |
| arm_X | 5215595..5215770 | 551..726 | 100 | <- | Minus |
| arm_X | 5215852..5216360 | 42..550 | 100 | <- | Minus |
| arm_X | 5216423..5216441 | 23..41 | 100 | | Minus |
