FMO06942.5prime Sequence
1152 bp (981 high quality bases) assembled on 2008-10-01
> FMO06942.5prime
CAGTCGACATGGATGTTGAAATACCTGTTTTGGCTGGATATCTTAATGTG
CCGACCCAAACTGGATTTTCGCTAAATCGCATCTCGAAAAAGAAAGCATG
CAGTCGCTACTGTTTGCTATTCAAGGCCAGTCGGCATGGGATTGCCCGCC
TGGAGATGTGCGAAAGCAAGGAGGACCGGAACCCCAAAATCTTCACCCTC
GAAAACTGTGTGAAGATCACTCAGGAGCCGCCTCCCGAACGCCTCATTCA
CATTGTCAAGCGGCAGGCTACCCTAACACTGAGCACAAGTAGCGAGGAGG
AGCTCAAGGATTGGATCACCGCCCTGCAAACGGTGGCCTTCTGTGACACC
TCACCATCGGGGGGAATCGGGGCCATCGAGGAGGACAACGACCTCTACTG
CAGCTCCTTTGATGGCTTGTTCATTATCACGTTGATTCCATCCGAGGCCT
CCATTCGTTGCTGCATTGAACCTAAGACATATATGCTCCAAATGACGCCC
ACTGAACTTCAGTTGAAATCGGAGGATTTGGGCGCCACAATCGCCATGTG
GCCATATCGTTTCATTAGGAAGTACGGCTATCGCGATGGCAAGTTCACCT
TTGAGGCGGGCAGAAAATGCACCACCGGCGAAGGCGTTTTCACCCTGGAT
CACACCAATCCACAGGAGGTATTCCGCTGCATGTCCGCCAAAGATGAAGT
CGATGAAGAAACTGATTAGCGGCGATAGTCTGAGCACCTTGGAGTGCGGG
TGAGAATCAGTTTAGTGCGGCAGCTGGCATGGAGCCCGGTTCGCGAAGCC
CCACTGCCCCCATCACCGTCAAGTAATCCCCACGGTGGCGAGTTCGAGAT
CAACTCAACGCAAAGCTGCATATCCCTGAGGGGCTTCATAGCTCTAACGA
TTCTCTATAACTTCTCGGCGGGTGGAGTGGAGCAAGTGCGCCACAGCACG
GGTGGAAGCGTTTTAAGAAGTACGGAGGAATCCCGGCTATCCGTGGCCCG
CAATAGCATAGCAACAGCAGCAGCGCCAAAACTATTCCCAAACAAACGCC
CCGCATATCCCCGACACCATTGTGGATATATCAGGGAAATTGTGGAAATA
TGAAACTGGGGCCTAACTATCGATTCTTTCTCATTCGCTAATTCCGAATG
TA
FMO06942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dok-RA | 3487 | CG2079-RA | 376..1520 | 9..1147 | 4830 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7326097..7326756 | 411..1066 | 2440 | 95 | Plus |
| X | 23542271 | X | 7325534..7325854 | 91..411 | 1605 | 100 | Plus |
| X | 23542271 | X | 7324589..7324672 | 9..92 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:07:12 has no hits.
FMO06942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:53 Download gff for
FMO06942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 370..1417 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:03 Download gff for
FMO06942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 366..1413 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:34 Download gff for
FMO06942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 370..1417 | 1..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:34 Download gff for
FMO06942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7325536..7325853 | 93..410 | 100 | -> | Plus |
| X | 7324583..7324672 | 1..92 | 95 | -> | Plus |
| X | 7326097..7326714 | 411..1024 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:53 Download gff for
FMO06942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7218616..7218705 | 1..92 | 95 | -> | Plus |
| arm_X | 7219569..7219886 | 93..410 | 100 | -> | Plus |
| arm_X | 7220130..7220747 | 411..1024 | 96 | == | Plus |
