FMO06943.5prime Sequence
1164 bp (1034 high quality bases) assembled on 2008-10-01
> FMO06943.5prime
CAGTCGACATGAAAACCTCTGGCGCCAGCAATACTGACGAGCTGAACAAG
TCATCGCACAGCAAAGTCAGCAAAAAGTCCACTAAGTCGCGATCTAAGTC
GGCGAAATTGGAGTTGACTGGAAAGAATTCCCTGTCGGCATCCGCATCAT
CCTCCATCGCATCCGCAGTGAGCGGGGGCGTTGCAGTGGGCAGCCTGCCG
GCCACGCCCACTCACCTAAACATGGTGACAACGCCCACCACGCCAACATC
TAGTCTGGGTAACTACAATCTGTTTGACGCCTCATTTGCGGTAGCAGGAA
GTGGTGGGCACGGACTTGCAGGCGGCATCGCGGGCGCAGAAGCCTCTGGC
AACTCCAGTCGAATGGGTCATCAGAAGAGCTATGCTGGTTTCGATCCGCG
CAGCATCAAGATCTTTTGGGAGCAGCACGACCAGACCGATGTGGAACTCT
CCCAGGATGTGTGCGCCCGTTTGGCGGAAGATGCCTCCTACAAAGTCTGG
GAGCTGATCAATAATGTCAAAATATACTCGCGCCACTCGGGCGGAGTGGT
GACATACGACCTGGTGAACGAAGTGCTAAAAGATGCCGATGTGCCGCCTA
TGCTGGGTGCGATGGACAGCGACTGGGACCGGATCGACTATGACGGCAGT
TTTTACTTTCACTCGGATAAGATCTTCGAGCTGAGCGCGGAGTTTCAGAA
GGAAGTCAATCTGTGCACACCTGATGATGCAGACTTTCAGAGCATCTGCC
CAGTGGAGGATAAGCACATGGACCAACTAAGACAGTGTGTCCAGAGTCTT
GTGACGGCAGCCCTTTTTGCGGACAGCAATCCCAGACGGCCGCCGTCTGC
CATGCTTTTCAGACACCCCTGATGGGATCTATCTACCGAGTGATTGTGAG
TAAGATGGTCCAGTTGCTAGCCTTTAAGCAGCAGACCATTTGAGCAGCGA
TGCTGGCGACTGCTCGAGCATGCACTACAACGCCACTGCTAATCACATGC
CCGCCGCCGGAGTACTTCACCTGGCGAGGTATCTGTTCAGCCAGCTTATT
GCACTTACGAAACTATCCAAGCTCCACACGTCGACCTAATCGGACACCAC
TTCATCAAATGAATTGAAAAACTAGGTTGACCGAACAGGCCATAATCCGT
AACTAGAAAACTGC
FMO06943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Saf6-RA | 2416 | CG3883-RA | 120..1206 | 9..1086 | 5090 | 98.5 | Plus |
| Saf6-RB | 2407 | CG3883-RB | 120..1197 | 9..1086 | 4945 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 814639..815221 | 1086..513 | 2300 | 96.6 | Minus |
| 2L | 23513712 | 2L | 815474..815831 | 366..9 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 815275..815422 | 512..365 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:28 has no hits.
FMO06943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:06 Download gff for
FMO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 115..1219 | 2..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:01 Download gff for
FMO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-RA | 116..1220 | 2..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:15 Download gff for
FMO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 115..1219 | 2..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:15 Download gff for
FMO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 814639..815221 | 513..1086 | 97 | <- | Minus |
| 2L | 815275..815421 | 366..512 | 100 | <- | Minus |
| 2L | 815475..815836 | 2..365 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:06 Download gff for
FMO06943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 814639..815221 | 513..1086 | 97 | <- | Minus |
| arm_2L | 815275..815421 | 366..512 | 100 | <- | Minus |
| arm_2L | 815475..815836 | 2..365 | 98 | | Minus |
