FMO06944.5prime Sequence
1031 bp (940 high quality bases) assembled on 2008-10-01
> FMO06944.5prime
CAGTCGACATGTGGAACATGATGTGCGACGTAATGCCCACGATATCCGAG
GATAGCATCTCGCAGCGCTCCTCGCAGTTTAGCGGGGAGGATGCCAACTT
TGAGCAGCTGATGGTCTCCATGCTGGACGAGCGGGACAAGCTGATGGACA
GCCTGAGGGAGGCGCAGGAGCGGCTTAACGAGACGGAGAACAAGCTGCGT
GACGTCGAGAAGGAGCGGGACAGCCTGCAGCGACAGATTAACGCTAATCT
GCCGCAAGAGTTTGCCACCCTGACCAAGGAGCTGACGCAAGCGCGGGAGA
CCCTTTTGGAACGTGACGAGGAGATTGGGGAGCTCAAGGCGGAGAGGAAT
AATACCAGGCTTCTCCTCGAACATCTGGAGTGCTTGGTGTCCCGCCACGA
GCGTTCCCTGCGTATGACCGTTGTGAAGCGACAGGCTGCCGCCCAGAGCG
GCGTCTCCAGCGAGGTGGAAGTGCTCAAGGCGCTAAAGTCGCTGTTCGAG
CACCACAAGGCGCTGGACGAGAAGGTGCGCGAGCGGTTGCGGCTTTCCAT
CGAGAAGAACAACATGATGGAAGAGGAACTCAGCTCTGCCAAGGAGGAAC
TGGCCCAGTACAAGGCGGGCGTGGTGCCAGCTGGCGTGGGCAGTGGCAGC
GGAGCAGGGAGTGCCGCAACCACCGCCGGTGGTGGGGGCGCCGAGAACGG
GCTCAAAAGAGAAGATGGCGGGGCGTGGGCGGATCTGGTGGGCGTTATGG
CGAGGCAAATGAGCTGAACGACTACCCAGCCAAACCCACGAGCTGCAAAC
CATTATTGAGAACCGACCTCGGAACTTTCACAATGGCAGCGACGCGTTTC
TGATTTGACAACAAGATTAGTGAGCTTGAAGAAGAACATGTCGCGAGTGC
AAAGGAACACTGCAAGGCCCAAGACAATGGTGCCAAGCTGCACGGGATCT
GCCGAGATTGTTGCCAAAAGAGATCAGATAACGATTACCCATGGGAAAGG
GTACTGAATGGTCAAAGGAGTCTCACGTTGC
FMO06944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Liprin-alpha-RE | 4466 | CG11199-RE | 204..1163 | 9..965 | 4440 | 98.1 | Plus |
| Liprin-alpha-RD | 4949 | CG11199-RD | 420..1379 | 9..965 | 4440 | 98.1 | Plus |
| Liprin-alpha-RC | 5970 | CG11199-RC | 416..1375 | 9..965 | 4440 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6725775..6726123 | 359..707 | 1745 | 100 | Plus |
| 2L | 23513712 | 2L | 6724848..6725097 | 9..258 | 1250 | 100 | Plus |
| 2L | 23513712 | 2L | 6725158..6725259 | 258..359 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 6726372..6726525 | 815..965 | 450 | 93.5 | Plus |
| 2L | 23513712 | 2L | 6726207..6726299 | 721..812 | 340 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:17 has no hits.
FMO06944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:04 Download gff for
FMO06944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-alpha-RC | 416..1390 | 9..977 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:31 Download gff for
FMO06944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-alpha-RA | 200..1174 | 9..977 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:26 Download gff for
FMO06944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-alpha-RC | 416..1390 | 9..977 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:26 Download gff for
FMO06944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6724848..6725096 | 9..257 | 100 | -> | Plus |
| 2L | 6725158..6725259 | 258..359 | 100 | -> | Plus |
| 2L | 6725776..6726129 | 360..714 | 99 | -> | Plus |
| 2L | 6726202..6726303 | 715..815 | 93 | -> | Plus |
| 2L | 6726373..6726540 | 816..977 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:04 Download gff for
FMO06944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6725776..6726129 | 360..714 | 99 | -> | Plus |
| arm_2L | 6726202..6726303 | 715..815 | 93 | -> | Plus |
| arm_2L | 6724848..6725096 | 9..257 | 100 | -> | Plus |
| arm_2L | 6725158..6725259 | 258..359 | 100 | -> | Plus |
| arm_2L | 6726373..6726540 | 816..977 | 92 | | Plus |
