FMO06947.5prime Sequence
711 bp (711 high quality bases) assembled on 2008-10-01
> FMO06947.5prime
CAGTCGACATGGAGGAATCGCACGACTTCCAGTTCGTCCTTCCCCTGAAT
GCATCTGATCTGATCAACTCCAGCGGAGATCAGTATTACGTGAAGGAGAT
TTTTGGCGCCCAGGAGATTCCCGCGAAACTACAAGAATGCAAGCGCAAAG
TGCACTTGGGCGATCCTTTTTATATATTCGAGCACTTCGACTTGTATTAC
TCGATCATCGAGGCCCGCGGTTCAGATGGCGCCTCTGCACAGAATCTAAT
GAGGTCCTTTGACCTGCTCTACCTGACCGTGGAGAAACTGTTCCAAGACT
TGCAGCCCCTGCTGACGGCCAGTGAGCCCATGTCTAACCAGCAGCGCAAT
AGTTACCTCAACCTGACCAAAATGACGCTGTTCCTCCAGGTGAGCACCGT
CAAGAAGATCAACAACAGTGTCCAGCAGGCCATGCGGGATCAGCAGCTCA
ATGTTCAGAAGAAGCGTGCCAAGCCATCGGAGGGATTGGAGCAGTTTCCC
AACTGGGAGGTTAAGCGCGGCAAGTTCTTGGTGCAGCTCTTCAACGTGCT
GCAGTGCCCGCTGGAGAAGCTCTGGAGTCCGCCCGTAGCCGAGGAGGACT
TTATAAATTTGCTCTGCGACCCCTGCTATCGAACAATCGAACTTTTGCCG
CTTCGCATGGACAACAAACACGTATTCGACACGATCTTCCAGATCTTGGG
AAATCGATAAG
FMO06947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-D2-RA | 4301 | CG1911-RA | 79..780 | 8..708 | 3470 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29675932..29676405 | 134..607 | 2370 | 100 | Plus |
| 3R | 32079331 | 3R | 29675729..29675856 | 8..135 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 29676466..29676558 | 608..700 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:48 has no hits.
FMO06947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:11 Download gff for
FMO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-D2-RA | 72..784 | 1..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:39 Download gff for
FMO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-D2-RA | 47..759 | 1..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:38 Download gff for
FMO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-D2-RA | 72..784 | 1..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:38 Download gff for
FMO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29676466..29676571 | 608..711 | 97 | | Plus |
| 3R | 29675722..29675856 | 1..135 | 97 | -> | Plus |
| 3R | 29675934..29676405 | 136..607 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:11 Download gff for
FMO06947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25501444..25501578 | 1..135 | 97 | -> | Plus |
| arm_3R | 25501656..25502127 | 136..607 | 100 | -> | Plus |
| arm_3R | 25502188..25502293 | 608..711 | 97 | | Plus |
