FMO06951.5prime Sequence
882 bp (881 high quality bases) assembled on 2008-10-01
> FMO06951.5prime
CAGTCGACATGGCGTTCCGGCTGCTTGGCACGGCCAAAACGATGGCCGGA
ATGATGCGGCGCAACTACACGGCGGGTTCCTTGCCGGGAAAGGGACAACG
CACACACATGGGTGCCACGGGCGCCGGGGTTTACATCCTGCCCACGGAGC
TGTCGCCCCTGCTGCGCTACGTGGTCAAACAGATCCAGCTGCTGTGCAAA
AAGCCGCCGAAGGGATTTGAAAAGTATTTCGAAGCCGGCGGCAAGTCGTC
TGGCCAACCGAAGGGATCCGTCGGCGATAAGAAGCCACCCGCGGGTTCCA
GCAAATCCGCCTCGGAGAAGCCCAGCACATCGACACCCGCCTCAGTTAAA
CCCAGCAGATCCCAAACAGACGCGAAATCGGACTGGAACTTCGGCATGTT
CAGCAACAGCTCGAGGGGGCCAGCAGGAAAAGGAGGCAACTCGCTGGGCG
GACGACCTCTGGGCGAGAACGGTGGCGGCGGGGACAGGGAGCGGTGGATC
CTTCTGGGTGCCATCGGAGCCGTCGTCCTGGTGGGTTCGTTCGCCTTCTT
CGAGATGGGCTACAAGGAGATCTCGTGGAAGGAGTTCGTCAACAGCTACC
TGTCGAAGGGCGTCGTGGAGAAGCTGGAGGTGGTTAACAAGAAGTGGGTG
AGAGTGCGTCTGCAGCAGAACAGCAACAGCGGCAGCGGCGTCTTGTGGTT
CAACATCGGCAGTGTCGATAGCTTCGAGCGAAACCTTGGAGGCAGCCCAG
ACGGAGCAGGGAACGGAATCCATCAACTTTGTGCCCGTATCTACCGCAAC
GAGGTGGAGGCCGCCAGTCTGACGGGTCTGCTGCCACGTTGCTCATCATA
GGCTTTTCTGGTCTATTTGATGCGAAAGTCCG
FMO06951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 3105 | CG6512-RA | 260..1132 | 8..880 | 4245 | 99.3 | Plus |
| CG6512-RB | 2816 | CG6512-RB | 175..709 | 346..880 | 2555 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17241217..17241721 | 595..91 | 2525 | 100 | Minus |
| 3L | 28110227 | 3L | 17240774..17241063 | 880..591 | 1230 | 97.9 | Minus |
| 3L | 28110227 | 3L | 17241784..17241869 | 93..8 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:23 has no hits.
FMO06951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:52 Download gff for
FMO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 253..1133 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:34:18 Download gff for
FMO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 248..1128 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:31 Download gff for
FMO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 253..1133 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:31 Download gff for
FMO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17240772..17241058 | 596..882 | 97 | <- | Minus |
| 3L | 17241217..17241719 | 93..595 | 100 | <- | Minus |
| 3L | 17241785..17241875 | 1..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:52 Download gff for
FMO06951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17233872..17234158 | 596..882 | 97 | <- | Minus |
| arm_3L | 17234317..17234819 | 93..595 | 100 | <- | Minus |
| arm_3L | 17234885..17234975 | 1..92 | 96 | | Minus |
