FMO06953.5prime Sequence
675 bp (675 high quality bases) assembled on 2008-10-01
> FMO06953.5prime
CAGTCGACATGGCTCAGATGACCGAGAAGAGGACAACGTCGGCCCGATCT
GGTACTGCCGCCAAGGAGAACCACAGCCTGACGGGAAGGCAGAACCAGCA
GAATCATCACAATCAGGGACACCAGCGCAGCGGCAAGGGCATCGAGATAC
TCGACTTCCACGAATCGTGGCTGGAGGAGGTTGAGCTGTACAAGGACAAG
ATGGTCATGTGCAAGAAGCTGGCCCATCACAATCACGTGCCCGCCTCATC
GCACCACCTGCAGCCGCACCTGGCCGCCCCGAATCGAAATCATGGCAGAA
TCGTCCAGTCCAGCACCCCGCAGCATCGCAGCTCAGCCGGCGGAGGATCC
GCGGCTGGAGCCACAGCATCCGATTCCGTCTCGGCTCGCTACTCGCCGCC
TGGTCAAAAGCAAAGATCACCGCCCTCGCCGCGCAAACGGCTGACGCCGG
AGAAGGTGGCCAACCTAGGAGGAGGAGGCGGTGGCTCAAAGGTAGGCGCG
CAGCGCATCATCATCCGTGGAACGCCACCCAACAGCTCCACACCCAAGGT
AGCCGCCACGCCCTCATATGTTCCCGTCGTGGCCAACGTGTGCTCCAATC
GGAGCCGTACAGAAAGTCCAGATGCTATTGAAGCGCGCAAGGGAGGAGGC
CTTCGCCCAGCACACGGCTGGGAAT
FMO06953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3964-RC | 3518 | CG3964-RC | 266..934 | 9..675 | 3145 | 98.2 | Plus |
| CG3964-RA | 3516 | CG3964-RA | 185..853 | 9..675 | 3145 | 98.2 | Plus |
| CG3964-RB | 3437 | CG3964-RB | 185..853 | 9..675 | 3145 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3863581..3864195 | 9..621 | 2855 | 98.4 | Plus |
| 2L | 23513712 | 2L | 3864539..3864595 | 619..675 | 255 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:32 has no hits.
FMO06953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:05 Download gff for
FMO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3964-RB | 177..853 | 1..675 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:55 Download gff for
FMO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3964-RA | 164..840 | 1..675 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:07 Download gff for
FMO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3964-RB | 177..853 | 1..675 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:07 Download gff for
FMO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3863573..3864195 | 1..621 | 97 | -> | Plus |
| 2L | 3864542..3864595 | 622..675 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:05 Download gff for
FMO06953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3863573..3864195 | 1..621 | 97 | -> | Plus |
| arm_2L | 3864542..3864595 | 622..675 | 96 | | Plus |
